format-version: 1.2 date: 08:03:2007 16:59 saved-by: Melissa Haendel auto-generated-by: OBO-Edit 1.100-beta21 synonymtypedef: PLURAL "PLURAL" default-namespace: zebrafish_anatomical_ontology [Term] id: ZFA:0000000 name: Brachet's cleft namespace: zebrafish_anatomy def: "The visible division between epiblast and hypoblast in the gastrula. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-404 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000001 name: Kupffer's vesicle namespace: zebrafish_anatomy def: "Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kimmel et al, 1995. Kupffer's vesicle has been compared to the mouse embryonic node. Drummond et al, 2005." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-406 relationship: develops_from ZFA:0000023 ! forerunner cell group relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000077 ! tail bud relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000003 name: adaxial cell namespace: zebrafish_anatomy synonym: "adaxial cells" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-408 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000279 ! segmental plate relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000004 name: anterior axial hypoblast namespace: zebrafish_anatomy synonym: "pre-polster" RELATED [ZFIN:ZDB-PUB-051019-5] xref: ZFIN:ZDB-ANAT-010921-409 relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0001378 ! axial hypoblast relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000005 name: artery namespace: zebrafish_anatomy synonym: "arterial system" RELATED [] xref: ZFIN:ZDB-ANAT-010921-411 is_a: ZFA:0001079 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000006 name: ball namespace: zebrafish_anatomy def: "The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "yolk ball" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-010921-413 relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0000084 ! yolk relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000007 name: blood namespace: zebrafish_anatomy def: "A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-414 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000008 name: brain namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-415 relationship: develops_from ZFA:0000146 ! presumptive brain relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000009 name: cardiac ventricle namespace: zebrafish_anatomy def: "One of four heart chambers." [ZFIN:curator] synonym: "ventricle" RELATED [] xref: ZFIN:ZDB-ANAT-010921-416 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000010 name: cardiovascular system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-417 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000011 name: caudal artery namespace: zebrafish_anatomy def: "Extension of the dorsal aorta in the tail. Kimmel et al, 1995." [ZFIN:curator] synonym: "CA" RELATED [] xref: ZFIN:ZDB-ANAT-010921-418 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001073 ! axial vasculature relationship: part_of ZFA:0005037 ! tail vasculature relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000012 name: central nervous system namespace: zebrafish_anatomy def: "The brain and spinal cord. Kimmel et al, 1995." [ZFIN:curator] synonym: "cns" RELATED [] xref: ZFIN:ZDB-ANAT-010921-420 relationship: develops_from ZFA:0000061 ! presumptive central nervous system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000013 name: cranial ganglia namespace: zebrafish_anatomy synonym: "presumptive cranial ganglia" RELATED [] xref: ZFIN:ZDB-ANAT-010921-422 is_a: ZFA:0000190 ! ganglion relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000014 name: dorsal aorta namespace: zebrafish_anatomy def: "Principal unpaired, median artery of the trunk, leading from the paired roots (radices) of the dorsal aorta to the caudal artery. Kimmel et al, 1995." [ZFIN:curator] synonym: "DA" RELATED [] xref: ZFIN:ZDB-ANAT-010921-424 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0005077 ! vascular cord relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001073 ! axial vasculature relationship: part_of ZFA:0005024 ! trunk vasculature relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000015 name: anatomical set namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-061101-1 is_a: ZFA:0100000 ! zebrafish anatomical entity relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000002 ! Cleavage:2-cell [Term] id: ZFA:0000016 name: ectoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-427 is_a: ZFA:0001122 ! primary germ layer relationship: develops_from ZFA:0001376 ! presumptive ectoderm relationship: end ZFS:0000038 ! Larval:Day 6 relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000017 name: endoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-428 is_a: ZFA:0001122 ! primary germ layer relationship: develops_from ZFA:0000416 ! presumptive endoderm relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000018 name: epiblast namespace: zebrafish_anatomy def: "The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-429 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000111 ! germ ring relationship: start ZFS:0000018 ! Gastrula:Germ-ring [Term] id: ZFA:0000019 name: epiphysis namespace: zebrafish_anatomy def: "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995." [ZFIN:curator] synonym: "pineal gland" RELATED [] xref: ZFIN:ZDB-ANAT-010921-430 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001127 ! visual system relationship: part_of ZFA:0001158 ! endocrine system relationship: part_of ZFA:0001359 ! pineal complex relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000020 name: extraembryonic structure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-431 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000021 name: eye field namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-432 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000570 ! optic primordium relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000022 name: floor plate namespace: zebrafish_anatomy synonym: "floorplate" RELATED [] synonym: "fp" RELATED [] xref: ZFIN:ZDB-ANAT-010921-433 relationship: develops_from ZFA:0001218 ! presumptive floor plate relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000023 name: forerunner cell group namespace: zebrafish_anatomy def: "A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kuppfer's vesicle. Cooper and D'Amico, 1996." [ZFIN:curator] synonym: "DFCs" RELATED [] synonym: "dorsal forerunner cells" RELATED [] synonym: "forerunner cells" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-434 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001126 ! noninvoluting endocytic marginal cell cluster relationship: end ZFS:0000023 ! Segmentation:1-4 somites relationship: start ZFS:0000017 ! Gastrula:50%-epiboly [Term] id: ZFA:0000024 name: retinal ganglion cell layer namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-435 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000026 name: hatching gland namespace: zebrafish_anatomy def: "A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995." [ZFIN:curator] synonym: "hgg" RELATED [] xref: ZFIN:ZDB-ANAT-010921-437 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000027 name: paired fin skeleton namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060331-1 is_a: ZFA:0000434 ! skeletal system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000028 name: heart primordium namespace: zebrafish_anatomy def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-439 relationship: develops_from ZFA:0001065 ! lateral mesoderm relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000029 name: hindbrain namespace: zebrafish_anatomy def: "The most posterior of the three principal regions of the brain, forming the rhombencephalon and all or most of the metencephalon. Kimmel et al, 1995." [ZFIN:curator] synonym: "rhombencephalon" RELATED [] xref: ZFIN:ZDB-ANAT-010921-440 relationship: develops_from ZFA:0000569 ! presumptive hindbrain relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000030 name: macula utricle namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-441 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000700 ! utricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000031 name: hypochord namespace: zebrafish_anatomy def: "A transient rod-like structure which is endodermally derived and located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Eriksson and Lofberg, 2000." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-442 relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000017 ! endoderm relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000032 name: hypothalamus namespace: zebrafish_anatomy def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-443 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000033 name: intermediate cell mass of mesoderm namespace: zebrafish_anatomy synonym: "ICM" RELATED [] synonym: "intermediate cell mass of Oellacher" RELATED [] synonym: "posterior intermediate cell mass" RELATED [] xref: ZFIN:ZDB-ANAT-010921-444 relationship: develops_from ZFA:0000121 ! lateral plate mesoderm relationship: develops_from ZFA:0001201 ! ventral lateral mesoderm relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000034 name: lateral line system namespace: zebrafish_anatomy def: "A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "ll" RELATED [] xref: ZFIN:ZDB-ANAT-010921-445 is_a: ZFA:0000282 ! sensory system is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000035 name: lens namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-447 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000036 name: liver and biliary system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-449 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000037 name: anatomical structure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-061101-2 is_a: ZFA:0100000 ! zebrafish anatomical entity relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000038 name: margin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-451 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0000039 name: median axial vein namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-452 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000040 name: median fin fold namespace: zebrafish_anatomy synonym: "median fin" RELATED [] xref: ZFIN:ZDB-ANAT-010921-453 is_a: ZFA:0000108 ! fin relationship: end ZFS:0000037 ! Larval:Day 5 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000041 name: mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-454 is_a: ZFA:0001122 ! primary germ layer relationship: develops_from ZFA:0001377 ! presumptive mesoderm relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000042 name: midbrain hindbrain boundary namespace: zebrafish_anatomy synonym: "isthmus" RELATED [] synonym: "mhb" RELATED [] xref: ZFIN:ZDB-ANAT-010921-455 relationship: develops_from ZFA:0001187 ! presumptive midbrain hindbrain boundary relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000043 name: muscle pioneer somite 1 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 1" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-456 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000963 ! slow muscle cell somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000044 name: myotome somite 14 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-457 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000726 ! somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000045 name: neural crest namespace: zebrafish_anatomy def: "A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-458 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001120 ! neuroectoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000046 name: retinal neural layer namespace: zebrafish_anatomy synonym: "neuroretina" RELATED [] xref: ZFIN:ZDB-ANAT-010921-459 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000152 ! retina relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000047 name: peripheral olfactory organ namespace: zebrafish_anatomy synonym: "nose" RELATED [] xref: ZFIN:ZDB-ANAT-010921-463 relationship: develops_from ZFA:0000048 ! olfactory placode relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001149 ! olfactory system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000048 name: olfactory placode namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-464 is_a: ZFA:0001309 ! neurogenic placode relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001149 ! olfactory system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000049 name: optic recess namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-465 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000050 name: optic vesicle namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-466 relationship: develops_from ZFA:0000570 ! optic primordium relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000051 name: otic vesicle namespace: zebrafish_anatomy def: "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [ZFIN:curator] synonym: "otic capsule" RELATED [] synonym: "otocyst" RELATED [] synonym: "ov" RELATED [] xref: ZFIN:ZDB-ANAT-010921-468 relationship: develops_from ZFA:0000138 ! otic placode relationship: end ZFS:0000036 ! Larval:Day 4 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000052 name: dorsal actinotrichia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-1 is_a: ZFA:0000089 ! actinotrichia relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000102 ! dorsal fin fold relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000053 name: presumptive segmental plate namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-470 relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000054 name: pericardial sac namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-471 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000056 name: pharynx namespace: zebrafish_anatomy def: "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-473 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000058 name: polster namespace: zebrafish_anatomy def: "The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "pillow" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-010921-475 relationship: develops_from ZFA:0000004 ! anterior axial hypoblast relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000060 ! prechordal plate relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000059 name: postoptic commissure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-476 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000060 name: prechordal plate namespace: zebrafish_anatomy def: "Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-477 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001204 ! axial mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000061 name: presumptive central nervous system namespace: zebrafish_anatomy synonym: "neurectoderm" RELATED [] synonym: "prospective neuroectoderm" RELATED [] synonym: "prospective vegetal ectoderm" RELATED [] xref: ZFIN:ZDB-ANAT-010921-478 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000062 name: presumptive forebrain namespace: zebrafish_anatomy synonym: "presumptive prosencephalon" RELATED [] xref: ZFIN:ZDB-ANAT-010921-479 relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000146 ! presumptive brain relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000063 name: presumptive neural plate namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-480 relationship: end ZFS:0000020 ! Gastrula:75%-epiboly relationship: part_of ZFA:0000061 ! presumptive central nervous system relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000064 name: presumptive pigmented epithelium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-481 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000050 ! optic vesicle relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000066 name: proctodeum namespace: zebrafish_anatomy def: "An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage." [ZFIN:curator] synonym: "anus" RELATED [] xref: ZFIN:ZDB-ANAT-010921-484 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000067 name: pronephric mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-485 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0001206 ! intermediate mesoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000068 name: proneural cluster namespace: zebrafish_anatomy synonym: "proneural clusters" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-486 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000061 ! presumptive central nervous system relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000069 name: rhombomere 6 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r6" RELATED [] xref: ZFIN:ZDB-ANAT-010921-487 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001210 ! presumptive rhombomere 6 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000070 name: sensory axons peripheral namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-488 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000282 ! sensory system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000071 name: shield namespace: zebrafish_anatomy synonym: "organizer" RELATED [] synonym: "Spemann Mangold organizer" RELATED [] synonym: "Spemann's organizer" RELATED [] xref: ZFIN:ZDB-ANAT-010921-489 relationship: end ZFS:0000019 ! Gastrula:Shield relationship: part_of ZFA:0000111 ! germ ring relationship: start ZFS:0000019 ! Gastrula:Shield [Term] id: ZFA:0000072 name: somite 1 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-490 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000073 name: somite 5 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-492 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000074 name: somite 26 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-493 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000075 name: spinal cord namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-494 relationship: develops_from ZFA:0001135 ! neural tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000076 name: swim bladder namespace: zebrafish_anatomy def: "The swim bladder is a double-chambered organ located in the coelom and used to maintain buoyancy and may function as an acoustic resonator. The zebrafish does not appear to have a gas gland, but it is not yet clear if there are gas producing cells distrubuted more widely. Finney et al, 2006." [ZFIN:curator] synonym: "gas bladder" RELATED [] xref: ZFIN:ZDB-ANAT-010921-495 is_a: ZFA:0000496 ! organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000204 ! esophagus relationship: part_of ZFA:0001438 ! coelom relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000077 name: tail bud namespace: zebrafish_anatomy synonym: "tailbud" RELATED [] xref: ZFIN:ZDB-ANAT-010921-496 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000078 name: ventral actinotrichia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-2 is_a: ZFA:0000089 ! actinotrichia relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001069 ! ventral fin fold relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000079 name: telencephalon namespace: zebrafish_anatomy def: "The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-498 relationship: develops_from ZFA:0000571 ! presumptive telencephalon relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000109 ! forebrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000080 name: trigeminal neural crest namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-499 relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0001194 ! cranial neural crest relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000081 name: trunk mesenchyme namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-500 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000393 ! mesenchyme relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000082 name: vein namespace: zebrafish_anatomy synonym: "venous system" RELATED [] xref: ZFIN:ZDB-ANAT-010921-501 is_a: ZFA:0001079 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000083 name: ventral mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-502 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000084 name: yolk namespace: zebrafish_anatomy def: "Nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-503 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000036 ! Larval:Day 4 relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000085 name: apical ectodermal ridge pectoral fin bud namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-504 relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000141 ! pectoral fin bud relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000086 name: EVL namespace: zebrafish_anatomy def: "Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm. Kimmel et al, 1995." [ZFIN:curator] synonym: "enveloping layer" RELATED [ZFIN:ZDB-PUB-961014-576] synonym: "periderm" RELATED [] xref: ZFIN:ZDB-ANAT-010921-505 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001484 ! superficial blastomere relationship: end ZFS:0000021 ! Gastrula:90%-epiboly relationship: part_of ZFA:0001176 ! blastoderm relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0000088 name: YSL namespace: zebrafish_anatomy def: "Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. Kimmel et al, 1995." [ZFIN:curator] synonym: "periblast" RELATED [ZFIN:ZDB-PUB-961014-576] synonym: "yolk syncytial layer" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-010921-508 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000084 ! yolk relationship: develops_from ZFA:0000541 ! marginal blastomere relationship: end ZFS:0000037 ! Larval:Day 5 relationship: start ZFS:0000011 ! Blastula:1k-cell [Term] id: ZFA:0000089 name: actinotrichia namespace: zebrafish_anatomy def: "Slender, horny, flexible, unsegmented fibrils which strengthen the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of a scleroprotein called elastoidine. http://www.briancoad.com/Dictionary/A.htm" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060131-3 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000108 ! fin relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000090 name: apical ectodermal ridge dorsal fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-511 relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001173 ! dorsal fin relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000091 name: axial chorda mesoderm namespace: zebrafish_anatomy synonym: "chordamesoderm" RELATED [] xref: ZFIN:ZDB-ANAT-010921-512 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001204 ! axial mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000092 name: axis namespace: zebrafish_anatomy synonym: "midline" RELATED [] xref: ZFIN:ZDB-ANAT-010921-513 is_a: ZFA:0001308 ! cardinal organism part relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000017 ! Gastrula:50%-epiboly [Term] id: ZFA:0000093 name: blastomere namespace: zebrafish_anatomy def: "A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995." [ZFIN:curator] synonym: "blastomeres" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-514 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000015 ! Blastula:Dome relationship: part_of ZFA:0001175 ! blastodisc relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000094 name: blood island namespace: zebrafish_anatomy def: "Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension. Kimmel et al, 1995." [ZFIN:curator] synonym: "blood islands" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-515 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000033 ! intermediate cell mass of mesoderm relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000095 name: pharyngeal arch 3-7 skeleton namespace: zebrafish_anatomy def: "Skeletal and cartilagenous elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention. Kimmel et al, 1995." [ZFIN:curator] synonym: "branchial arches" RELATED [] synonym: "gill arches 1-5" RELATED [] synonym: "visceral arches 3-7" RELATED [] xref: ZFIN:ZDB-ANAT-010921-516 is_a: ZFA:0001216 ! pharyngeal arch skeleton relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000096 name: cardinal system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-517 is_a: ZFA:0001079 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000097 name: carotid artery namespace: zebrafish_anatomy def: "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995." [ZFIN:curator] synonym: "internal carotid artery" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-010921-518 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000098 name: proliferative region namespace: zebrafish_anatomy synonym: "cell cycle" RELATED [] synonym: "cell division" RELATED [] synonym: "proliferation" RELATED [] xref: ZFIN:ZDB-ANAT-010921-520 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000012 ! Blastula:High [Term] id: ZFA:0000099 name: brain vasculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-4 is_a: ZFA:0001267 ! cranial vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000100 name: cerebellum namespace: zebrafish_anatomy def: "Specialized brain region derived from the dorsal metencephalon (anterior hindbrain, and perhaps including posterior midbrain) and becoming distinctive late in the segmentation period. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-522 relationship: develops_from ZFA:0001442 ! upper rhombic lip relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000101 name: diencephalon namespace: zebrafish_anatomy def: "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-524 relationship: develops_from ZFA:0000574 ! presumptive diencephalon relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000109 ! forebrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000102 name: dorsal fin fold namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-525 relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000103 name: embryo namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-528 is_obsolete: true [Term] id: ZFA:0000104 name: lateral cells namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-529 is_obsolete: true [Term] id: ZFA:0000105 name: epidermis namespace: zebrafish_anatomy def: "A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. Le Guellec et al, 2004." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-530 relationship: develops_from ZFA:0000016 ! ectoderm relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000106 name: extension namespace: zebrafish_anatomy def: "The posterior elongated region of the yolk cell that forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "yolk extension" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-010921-531 relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0000084 ! yolk relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000107 name: eye namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-532 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: part_of ZFA:0001127 ! visual system relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000108 name: fin namespace: zebrafish_anatomy synonym: "fins" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-533 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000109 name: forebrain namespace: zebrafish_anatomy def: "The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995." [ZFIN:curator] synonym: "prosencephalon" RELATED [] xref: ZFIN:ZDB-ANAT-010921-534 relationship: develops_from ZFA:0000062 ! presumptive forebrain relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000110 name: fourth ventricle namespace: zebrafish_anatomy def: "Fluid-filled brain cavity. Kimmel et al, 1995." [ZFIN:curator] synonym: "4th ventricle" RELATED [] synonym: "hindbrain ventricle" RELATED [] synonym: "rhombencephalic ventricle" RELATED [] synonym: "rhombencephalic vesicle" RELATED [] xref: ZFIN:ZDB-ANAT-010921-535 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000111 name: germ ring namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-536 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000038 ! margin relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000018 ! Gastrula:Germ-ring [Term] id: ZFA:0000112 name: gut namespace: zebrafish_anatomy def: "The alimentary or digestive tract, and associated organs." [ZFIN:curator] synonym: "alimentary canal" RELATED [] synonym: "gut tube" RELATED [] xref: ZFIN:ZDB-ANAT-010921-537 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000113 name: head mesenchyme namespace: zebrafish_anatomy def: "Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-538 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000393 ! mesenchyme relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000114 name: heart namespace: zebrafish_anatomy def: "Blood pumping organ composed of four chambers: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-539 is_a: ZFA:0000496 ! organ relationship: develops_from ZFA:0000360 ! heart tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000010 ! cardiovascular system relationship: part_of ZFA:0001438 ! coelom relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000115 name: heart rudiment namespace: zebrafish_anatomy def: "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001." [ZFIN:curator] synonym: "heart cone" RELATED [] synonym: "rudimentary heart" RELATED [] xref: ZFIN:ZDB-ANAT-010921-540 relationship: develops_from ZFA:0000028 ! heart primordium relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000116 name: macula lagena namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-541 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000374 ! lagena relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000117 name: hypoblast namespace: zebrafish_anatomy def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. Kimmel et al, 1995." [ZFIN:curator] synonym: "mesendoderm" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-010921-542 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000111 ! germ ring relationship: start ZFS:0000018 ! Gastrula:Germ-ring [Term] id: ZFA:0000118 name: hypophysis namespace: zebrafish_anatomy def: "An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin." [ZFIN:curator] synonym: "pituitary" RELATED [] xref: ZFIN:ZDB-ANAT-010921-543 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000119 name: retinal inner nuclear layer namespace: zebrafish_anatomy synonym: "inner nuclear layer" RELATED PLURAL [] synonym: "intermediate cell layer" RELATED [] xref: ZFIN:ZDB-ANAT-010921-544 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000120 name: lateral line ganglion namespace: zebrafish_anatomy synonym: "lateral line ganglia" RELATED PLURAL [] synonym: "llg" RELATED [] xref: ZFIN:ZDB-ANAT-010921-546 is_a: ZFA:0000013 ! cranial ganglia relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000121 name: lateral plate mesoderm namespace: zebrafish_anatomy synonym: "lateral plate" RELATED [] xref: ZFIN:ZDB-ANAT-010921-547 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000122 name: lens placode namespace: zebrafish_anatomy def: "Ectodermal primordium of the lens of the eye. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-548 relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000123 name: liver namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-549 relationship: develops_from ZFA:0000124 ! liver primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000036 ! liver and biliary system relationship: part_of ZFA:0001159 ! immune system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000124 name: liver primordium namespace: zebrafish_anatomy synonym: "liver bud" RELATED [] xref: ZFIN:ZDB-ANAT-010921-550 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000036 ! liver and biliary system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000125 name: neuromast mandibular namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromasts mandibular" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-551 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000259 ! mandibular lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000126 name: centrum namespace: zebrafish_anatomy def: "Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999)." [ZFIN:curator] synonym: "autocentrum" RELATED [] xref: ZFIN:ZDB-ANAT-060331-2 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001189 ! vertebrae relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000127 name: mesenchyme condensations namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-554 is_obsolete: true [Term] id: ZFA:0000128 name: midbrain namespace: zebrafish_anatomy def: "The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995." [ZFIN:curator] synonym: "mesencephalon" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-010921-555 relationship: develops_from ZFA:0000148 ! presumptive midbrain relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000130 name: olfactory pit namespace: zebrafish_anatomy synonym: "nasal cavity" RELATED [] synonym: "nasal pit" RELATED [] synonym: "olfactory cavity" RELATED [] xref: ZFIN:ZDB-ANAT-010921-558 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000047 ! peripheral olfactory organ relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000131 name: neural keel namespace: zebrafish_anatomy def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. Kimmel et al, 1995." [ZFIN:curator] synonym: "presumptive central nervous system" RELATED [] xref: ZFIN:ZDB-ANAT-010921-559 relationship: develops_from ZFA:0000132 ! neural plate relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0001120 ! neuroectoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000132 name: neural plate namespace: zebrafish_anatomy def: "The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995." [ZFIN:curator] synonym: "presumptive central nervous system" RELATED [] xref: ZFIN:ZDB-ANAT-010921-560 relationship: develops_from ZFA:0000417 ! presumptive spinal cord relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0001120 ! neuroectoderm relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0000133 name: neural rod namespace: zebrafish_anatomy def: "An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube. Kimmel et al, 1995." [ZFIN:curator] synonym: "presumptive central nervous system" RELATED [] xref: ZFIN:ZDB-ANAT-010921-561 relationship: develops_from ZFA:0000131 ! neural keel relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0001120 ! neuroectoderm relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000135 name: notochord namespace: zebrafish_anatomy def: "Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding a sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-564 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000091 ! axial chorda mesoderm relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000317 ! axial skeleton relationship: part_of ZFA:0001414 ! occipital region relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000136 name: neuromast otic namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromasts otic" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-565 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000464 ! otic lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000137 name: optic stalk namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-566 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000138 name: otic placode namespace: zebrafish_anatomy def: "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [ZFIN:curator] synonym: "otic capsule" RELATED [] synonym: "otocyst" RELATED [] xref: ZFIN:ZDB-ANAT-010921-568 is_a: ZFA:0001138 ! vestibuloauditory system is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000139 name: immature otolith namespace: zebrafish_anatomy def: "Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)" [ZFIN:curator] synonym: "immature otoliths" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-010921-569 relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0000051 ! otic vesicle relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000140 name: pancreas namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-570 is_a: ZFA:0000496 ! organ relationship: develops_from ZFA:0001390 ! pancreatic bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001371 ! pancreatic system relationship: part_of ZFA:0001438 ! coelom relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000141 name: pectoral fin bud namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-571 is_a: ZFA:0001383 ! fin bud relationship: develops_from ZFA:0001453 ! pectoral fin field relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000142 name: peripheral nervous system namespace: zebrafish_anatomy def: "Nervous structures including ganglia outside of the central nervous system. Kimmel et al, 1995." [ZFIN:curator] synonym: "pns" RELATED [] xref: ZFIN:ZDB-ANAT-010921-572 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000143 name: retinal photoreceptor layer namespace: zebrafish_anatomy def: "The layer within the retina where the photoreceptor cell receptor segments reside." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-574 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000144 name: pigmented epithelium namespace: zebrafish_anatomy def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995." [ZFIN:curator] synonym: "pigmented retinal epithelium" RELATED [] synonym: "PRE" RELATED [] synonym: "RPE" RELATED [] xref: ZFIN:ZDB-ANAT-010921-575 relationship: develops_from ZFA:0000064 ! presumptive pigmented epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000152 ! retina relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000145 name: CNS tracts and commissures namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-5 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000146 name: presumptive brain namespace: zebrafish_anatomy synonym: "brain rudiment" RELATED [] xref: ZFIN:ZDB-ANAT-010921-578 relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000061 ! presumptive central nervous system relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000147 name: presumptive epidermis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-579 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000148 name: presumptive midbrain namespace: zebrafish_anatomy synonym: "presumptive mesencephalon" RELATED [] xref: ZFIN:ZDB-ANAT-010921-580 relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000146 ! presumptive brain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000149 name: primitive heart tube namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-583 relationship: develops_from ZFA:0000115 ! heart rudiment relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000150 name: pronephric duct namespace: zebrafish_anatomy def: "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the anal region where it empties separately from, and just posterior to the anus. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-585 relationship: develops_from ZFA:0000067 ! pronephric mesoderm relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000163 ! renal system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000151 name: pronephros namespace: zebrafish_anatomy def: "The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion.Kimmel et al, 1995." [ZFIN:curator] synonym: "embryonic kidney" RELATED [ZFIN:ZDB-PUB-961014-576] synonym: "kidney" RELATED [] xref: ZFIN:ZDB-ANAT-010921-586 is_a: ZFA:0000496 ! organ relationship: develops_from ZFA:0000067 ! pronephric mesoderm relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000163 ! renal system relationship: part_of ZFA:0001438 ! coelom relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000152 name: retina namespace: zebrafish_anatomy def: "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-587 relationship: develops_from ZFA:0001071 ! presumptive retina relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001202 ! optic cup relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000153 name: rhombomere 8 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r8" RELATED [] xref: ZFIN:ZDB-ANAT-010921-588 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001214 ! presumptive rhombomere 8 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000154 name: sinus venosus namespace: zebrafish_anatomy def: "Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four heart chambers, the sinus venosus also acts as a pacemaker and is the first to contract. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-590 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000155 name: somite namespace: zebrafish_anatomy def: "Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995." [ZFIN:curator] synonym: "somitic mesoderm" RELATED [] xref: ZFIN:ZDB-ANAT-010921-591 relationship: develops_from ZFA:0000279 ! segmental plate relationship: develops_from ZFA:0000942 ! paraxial mesenchyme relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001115 ! trunk relationship: part_of ZFA:0001117 ! tail relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000156 name: somite 20 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-593 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000157 name: somite 30 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-594 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000158 name: compound centrum namespace: zebrafish_anatomy def: "This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator] synonym: "last vertebra" RELATED [] synonym: "ultimate vertebra" RELATED [] synonym: "urostyle" RELATED [] xref: ZFIN:ZDB-ANAT-010921-596 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000734 ! specialized centra/vertebra relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000159 name: tectal ventricle namespace: zebrafish_anatomy synonym: "cerebral aquaduct" RELATED [] synonym: "medial tectal ventricle" RELATED [] synonym: "mesencephalic ventricle" RELATED [] synonym: "mesencephalic vesicle" RELATED [] synonym: "midbrain ventricle" RELATED [] xref: ZFIN:ZDB-ANAT-010921-597 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000160 name: tegmentum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-598 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001354 ! mesencephalic tegmentum relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000161 name: third ventricle namespace: zebrafish_anatomy def: "Fluid-filled brain cavity. Kimmel et al, 1995." [ZFIN:curator] synonym: "3rd ventricle" RELATED [] synonym: "diencephalic ventricle" RELATED [] synonym: "diencephalic vesicle" RELATED [] xref: ZFIN:ZDB-ANAT-010921-599 relationship: develops_from ZFA:0001259 ! forebrain ventricle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000162 name: trigeminal placode namespace: zebrafish_anatomy def: "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-010921-600 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000163 name: renal system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-601 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000164 name: ventral mesenchyme namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-010921-602 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000393 ! mesenchyme relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000165 name: inferior lobe namespace: zebrafish_anatomy synonym: "inferior lobes" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-1 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000347 ! dorsal zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000166 name: lateral crista namespace: zebrafish_anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "sensory patch" RELATED [] xref: ZFIN:ZDB-ANAT-011113-10 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000361 ! horizontal relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000167 name: anal fin skeleton namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-100 is_a: ZFA:0001123 ! median fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001162 ! anal fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000168 name: anterior macula namespace: zebrafish_anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "am" RELATED [] synonym: "sensory patch" RELATED [] xref: ZFIN:ZDB-ANAT-011113-101 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000386 ! macula relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000169 name: antorbital namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-102 is_obsolete: true [Term] id: ZFA:0000170 name: basibranchial namespace: zebrafish_anatomy def: "Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-104 relationship: develops_from ZFA:0001220 ! copulae relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000171 name: basisphenoid namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-105 is_obsolete: true [Term] id: ZFA:0000172 name: branchial muscle namespace: zebrafish_anatomy synonym: "branchial muscles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-106 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001307 ! pharyngeal musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000173 name: bulbus arteriosus namespace: zebrafish_anatomy def: "A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000." [ZFIN:curator] synonym: "outflow tract" RELATED [] synonym: "truncus" RELATED [] xref: ZFIN:ZDB-ANAT-011113-107 relationship: develops_from ZFA:0000818 ! vagal neural crest relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000174 name: caudal cerebellar tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-108 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000175 name: posterior lateral line nerve namespace: zebrafish_anatomy def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:curator] synonym: "caudal lateral line nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-109 is_a: ZFA:0000641 ! cranial nerve is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001471 ! posterior lateral line system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000176 name: lateral entopeduncular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-11 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000177 name: caudal oblique namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-110 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000178 name: caudal peduncle namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-111 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000179 name: caudal root of abducens nerve namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-112 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000180 name: caudal vein namespace: zebrafish_anatomy def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vvein in the posterior trunk. Kimmel et al, 1995." [ZFIN:curator] synonym: "CV" RELATED [] xref: ZFIN:ZDB-ANAT-011113-113 is_a: ZFA:0000082 ! vein relationship: develops_from ZFA:0001286 ! caudal vein plexus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001073 ! axial vasculature relationship: part_of ZFA:0005037 ! tail vasculature relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000181 name: caudal zone of D namespace: zebrafish_anatomy synonym: "posterior zone of dorsal telencephalic area" RELATED [] xref: ZFIN:ZDB-ANAT-011113-114 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000182 name: central caudal thalamic nucleus namespace: zebrafish_anatomy synonym: "central posterior thalamic nucleus" RELATED [] xref: ZFIN:ZDB-ANAT-011113-115 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000653 ! dorsal thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000183 name: central pretectum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-116 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000418 ! pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000184 name: cleithrum namespace: zebrafish_anatomy def: "Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-117 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000185 name: commissura rostral, pars ventralis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-118 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001108 ! anterior commissure relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000186 name: common cardinal vein namespace: zebrafish_anatomy def: "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus. Kimmel et al, 1995." [ZFIN:curator] synonym: "duct of Cuvier" RELATED [] xref: ZFIN:ZDB-ANAT-011113-119 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000096 ! cardinal system relationship: part_of ZFA:0005024 ! trunk vasculature relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000187 name: lateral granular eminence namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-12 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000307 ! vestibulolateralis lobe relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000188 name: corpus cerebelli namespace: zebrafish_anatomy synonym: "cerebellar corpus" RELATED [] xref: ZFIN:ZDB-ANAT-011113-120 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000189 name: otic region namespace: zebrafish_anatomy synonym: "cranial vault" RELATED [] xref: ZFIN:ZDB-ANAT-011113-121 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000377 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000190 name: ganglion namespace: zebrafish_anatomy def: "Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] synonym: "ganglia" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-122 is_a: ZFA:0000015 ! anatomical set relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000191 name: dentary namespace: zebrafish_anatomy def: "The dentary is a dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans." [ZFIN:curator] synonym: "dentary bone" RELATED [] xref: ZFIN:ZDB-ANAT-011113-123 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000192 name: descending trigeminal root namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-124 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000193 name: diffuse nuclei namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-125 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000165 ! inferior lobe relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000194 name: dorsal accessory optic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-126 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000183 ! central pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000195 name: dorsal depressor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-127 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000648 ! dorsal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000196 name: dorsal hypohyal namespace: zebrafish_anatomy def: "The dorsal hypohyal is a small cartilage replacement bone ossifying from the anterodorsal ceratohyal cartilage. Ossification begins on the medial surface of the ceratohyal cartilage at a ligamentous connection to basibranchial 1 (6.8 mm)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-128 is_a: ZFA:0001381 ! hypohyal relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000197 name: dorsal nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-129 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000213 ! habenula relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000198 name: lateral longitundinal fasciculus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-13 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000199 name: dorsal periventricular hypothalamus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-130 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000347 ! dorsal zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000200 name: dorsal root ganglion namespace: zebrafish_anatomy synonym: "dorsal root ganglia" RELATED [] synonym: "DRG" RELATED [] xref: ZFIN:ZDB-ANAT-011113-131 is_a: ZFA:0000190 ! ganglion relationship: develops_from ZFA:0001024 ! trunk neural crest relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000201 name: dorsal transverse namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-132 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000202 name: efferent branchial artery namespace: zebrafish_anatomy synonym: "EBA" RELATED [] xref: ZFIN:ZDB-ANAT-011113-133 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000203 name: epicentrals namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-134 is_obsolete: true [Term] id: ZFA:0000204 name: esophagus namespace: zebrafish_anatomy synonym: "oesophagus" RELATED [] xref: ZFIN:ZDB-ANAT-011113-135 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000205 name: external ventral flexor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-136 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000206 name: facial nerve motor nucleus namespace: zebrafish_anatomy synonym: "motor nucleus VII" RELATED [] synonym: "nVII" RELATED [] xref: ZFIN:ZDB-ANAT-011113-137 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000207 name: fin musculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-138 is_a: ZFA:0000548 ! musculature system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000208 name: gall bladder namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-139 is_a: ZFA:0000496 ! organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: part_of ZFA:0001438 ! coelom relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000209 name: lateral preglomerular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-14 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000210 name: gigantocellular part of magnocellular preoptic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-140 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000470 ! preoptic area relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000211 name: gill lamella namespace: zebrafish_anatomy synonym: "gill lamellae" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-141 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000212 name: granular eminence namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-142 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000213 name: habenula namespace: zebrafish_anatomy def: "The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [ZFIN:curator] synonym: "habenulae" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-143 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000509 ! epithalamus relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000214 name: hypobranchial vessel namespace: zebrafish_anatomy synonym: "hypobranchial vessels" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-144 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000215 name: inferior olive namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-145 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000216 name: infracarinalis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-146 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! body musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000217 name: inner ear namespace: zebrafish_anatomy def: "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)" [ZFIN:curator] synonym: "ear" RELATED [] synonym: "otic capsule" RELATED [] synonym: "otocyst" RELATED [] xref: ZFIN:ZDB-ANAT-011113-147 relationship: develops_from ZFA:0000051 ! otic vesicle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001138 ! vestibuloauditory system relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000218 name: interhyal namespace: zebrafish_anatomy def: "The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms." [ZFIN:curator] synonym: "stylohyal" RELATED [] xref: ZFIN:ZDB-ANAT-011113-148 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000219 name: intermediate reticular formation namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-149 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000542 ! medial column relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000220 name: lateral semicircular canal namespace: zebrafish_anatomy def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [ZFIN:curator] synonym: "lateral semicircular canals" RELATED [] xref: ZFIN:ZDB-ANAT-011113-15 relationship: develops_from ZFA:0000232 ! lateral semicircular canal primordia relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000221 name: internal levator namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-150 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000222 name: isthmic primary nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-152 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000433 ! sensory trigeminal nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000223 name: infraorbital 1 namespace: zebrafish_anatomy def: "Dermal bone that covers the region between the anterior margin of the eye and the upper jaw. Infraorbital 1 (the lachrymal) is the first and largest bone in the infraorbital series. Bears the anterior most part of the infraorbital canal." [ZFIN:curator] synonym: "lachrymal bone" RELATED [] synonym: "lacrymal bone" RELATED [] xref: ZFIN:ZDB-ANAT-011113-153 is_a: ZFA:0000376 ! infraorbital relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000224 name: larva namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-154 is_obsolete: true [Term] id: ZFA:0000225 name: lateral crista primordia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-155 relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000220 ! lateral semicircular canal relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000226 name: lateral ethmoid namespace: zebrafish_anatomy def: "Large, paired cartilage bones separating the olfactory region from the orbit. Arises from both perichondral and endochondral ossifications (Harrington 1955). Bordered by the mesethmoid anteriorly and overlain by the frontal dorsally, each lateral ethmoid extends medially to meet its fellow posteriorly along the midline. Develops from the laminae orbitonasales." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-156 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! ethmoid region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000227 name: lateral hypothalamic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-157 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000707 ! ventral zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000228 name: lateral line primordium namespace: zebrafish_anatomy synonym: "lateral line primordia" RELATED PLURAL [] synonym: "llp" RELATED [] xref: ZFIN:ZDB-ANAT-011113-158 relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000229 name: lateral olfactory tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-159 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000597 ! telencephalic tracts relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000230 name: longitudinal hypochordal namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-16 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000231 name: lateral recess namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-160 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000161 ! third ventricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000232 name: lateral semicircular canal primordia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-161 relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000233 name: lower oral valve namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-162 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000695 ! labial cavities relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000234 name: macula neglecta namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-163 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000559 ! otolith organ relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000235 name: magnocellular superficial pretectal nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-164 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000687 ! superficial pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000236 name: mandibular muscle namespace: zebrafish_anatomy synonym: "mandibular muscles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-165 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001307 ! pharyngeal musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000237 name: medial forebrain bundle diencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-167 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: part_of ZFA:0005111 ! medial forebrain bundle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000238 name: medial olfactory tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-168 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000597 ! telencephalic tracts relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000239 name: mesocoracoid namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-171 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000240 name: metapterygoid namespace: zebrafish_anatomy def: "The metapterygoid is a posterior bone that ossifies in the cartilaginous palatoquadrate arch. It first appears as a rod of bone with an anterodorsally projecting process from the middle of the dorsal surface (6.4 mm). The adult metapterygoid is roughly rectangular in shape with rounded corners and an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. The posterior end curves dorsally to form the posteroventral surface of the orbit." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-172 relationship: develops_from ZFA:0001399 ! palatoquadrate cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001272 ! dorsal mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000241 name: midline column namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-173 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000421 ! reticular formation relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000242 name: male organism namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-061101-3 is_a: ZFA:0001094 ! whole organism relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000243 name: neuromast namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "lateral line neuromast" RELATED [] synonym: "neuromasts" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-175 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000244 name: nucleus Edinger-Westphal namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-176 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000245 name: nucleus of the descending root namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-177 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000433 ! sensory trigeminal nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000246 name: nucleus taeniae namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-178 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000247 name: cranial nerve VIII namespace: zebrafish_anatomy synonym: "auditory nerve" RELATED [] synonym: "CN-VIII" RELATED [] synonym: "octaval nerve" RELATED [] synonym: "statoacoustic nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-179 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000248 name: magnocellular preoptic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-18 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000470 ! preoptic area relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000249 name: cranial nerve I namespace: zebrafish_anatomy synonym: "CN-I" RELATED [] synonym: "olfactory nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-180 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001149 ! olfactory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000250 name: opercle namespace: zebrafish_anatomy synonym: "opercles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-181 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000251 name: opercular-branchiostegal series namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-182 is_obsolete: true [Term] id: ZFA:0000252 name: optic tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-183 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000253 name: orbitosphenoid namespace: zebrafish_anatomy def: "Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anterolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-184 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000290 ! sphenoid region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000254 name: pancreas primordium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-185 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001371 ! pancreatic system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000255 name: paraxial mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-186 relationship: develops_from ZFA:0000591 ! presumptive paraxial mesoderm relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000256 name: pars subcommissuralis of V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-187 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000257 name: pectoral fin cartilage namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-188 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000943 ! pectoral fin skeleton relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000258 name: pelvic fin musculature namespace: zebrafish_anatomy synonym: "pelvic fins" RELATED [] xref: ZFIN:ZDB-ANAT-011113-189 is_a: ZFA:0000207 ! fin musculature relationship: develops_from ZFA:0001449 ! mesenchyme pelvic fin relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001184 ! pelvic fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000259 name: mandibular lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-19 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000260 name: periventricular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-190 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000707 ! ventral zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000261 name: pharyngohyoid namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-191 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000262 name: posterior semicircular canal namespace: zebrafish_anatomy def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [ZFIN:curator] synonym: "posterior semicircular canals" RELATED [] xref: ZFIN:ZDB-ANAT-011113-192 relationship: develops_from ZFA:0000412 ! posterior semicircular canal primordia relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000263 name: precaudal vertebrae namespace: zebrafish_anatomy def: "Post-Weberian vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal. Bird and Mabee, 2003." [ZFIN:curator] synonym: "abdominal vertebrae" RELATED [] synonym: "trunk vertebrae" RELATED [] xref: ZFIN:ZDB-ANAT-011113-193 is_a: ZFA:0001189 ! vertebrae relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000264 name: preopercle namespace: zebrafish_anatomy synonym: "preopercles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-194 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000265 name: presumptive dorsal mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-195 relationship: end ZFS:0000019 ! Gastrula:Shield relationship: part_of ZFA:0001377 ! presumptive mesoderm relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000266 name: pretecto-mamillary tract namespace: zebrafish_anatomy synonym: "pretectomamillary tract" RELATED [] xref: ZFIN:ZDB-ANAT-011113-196 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000267 name: primary olfactory fiber layer namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-197 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000402 ! olfactory bulb relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000268 name: anal fin proximal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-199 is_a: ZFA:0001420 ! anal fin radial relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000269 name: inferior ventral flexor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-2 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000270 name: maxilla namespace: zebrafish_anatomy def: "The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. . Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae." [ZFIN:curator] synonym: "maxillae" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-20 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001272 ! dorsal mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000271 name: radial namespace: zebrafish_anatomy synonym: "radials" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-200 relationship: develops_from ZFA:0001456 ! pectoral fin endoskeletal disc relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000272 name: respiratory system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-201 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000273 name: rostral crista namespace: zebrafish_anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "sensory patch" RELATED [] xref: ZFIN:ZDB-ANAT-011113-203 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000675 ! rostral vertical relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000274 name: rostral octaval nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-204 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000401 ! octaval nerve sensory nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000275 name: rostral tegmental nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-205 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000276 name: rostrolateral thalamic nucleus of Butler & Saidel namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-206 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000458 ! ventral thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000277 name: scale namespace: zebrafish_anatomy synonym: "scales" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-207 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001183 ! dermal superficial region relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0000278 name: secondary gustatory nucleus medulla oblongata namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-208 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000279 name: segmental plate namespace: zebrafish_anatomy def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995." [ZFIN:curator] synonym: "presomitic mesoderm" RELATED [] synonym: "PSM" RELATED [] xref: ZFIN:ZDB-ANAT-011113-209 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000255 ! paraxial mesoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000280 name: medial division namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-21 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000281 name: sensory hair cell posterior macula namespace: zebrafish_anatomy def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:curator] synonym: "sensory hair cells posterior macula" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-210 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000558 ! posterior macula relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000282 name: sensory system namespace: zebrafish_anatomy synonym: "sensory systems" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-211 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000283 name: sternohyoid namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-212 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000236 ! mandibular muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000284 name: subopercle namespace: zebrafish_anatomy synonym: "subopercles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-213 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000285 name: superficial adductor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-214 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000286 name: superficial lateralis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-215 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! body musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000287 name: superior dorsal flexor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-216 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000288 name: supracarinalis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-217 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! body musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000289 name: supramaxillae namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-218 is_obsolete: true [Term] id: ZFA:0000290 name: sphenoid region namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-219 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000377 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000291 name: medial octavolateralis nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-22 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000381 ! lateral line sensory nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000292 name: surface structure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-220 is_a: ZFA:0001308 ! cardinal organism part relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000293 name: synencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-221 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000294 name: torus lateralis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-222 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000295 name: trigeminal ganglion namespace: zebrafish_anatomy def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995." [ZFIN:curator] synonym: "gV" RELATED [] xref: ZFIN:ZDB-ANAT-011113-223 is_a: ZFA:0000013 ! cranial ganglia relationship: develops_from ZFA:0000162 ! trigeminal placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000296 name: uncrossed tecto-bulbar tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-225 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000297 name: vagal lobe namespace: zebrafish_anatomy synonym: "motor nucleus X" RELATED [] synonym: "nX" RELATED [] xref: ZFIN:ZDB-ANAT-011113-226 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000298 name: vent namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-227 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000299 name: ventral entopeduncular nucleus V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-228 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000300 name: ventral hypohyal namespace: zebrafish_anatomy def: "The ventral hypohyal ossifies first along the anteroventral tip of the ceratohyal cartilage at the insertion of the tendon from the sternohyoideus (5.7 mm)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-229 is_a: ZFA:0001381 ! hypohyal relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000301 name: medial rectus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-23 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000302 name: ventral nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-230 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000213 ! habenula relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000303 name: female organism namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-061101-4 is_a: ZFA:0001094 ! whole organism relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000304 name: ventral telencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-232 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000305 name: ventral sulcus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-233 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000032 ! hypothalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000306 name: ventrolateral thalamic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-234 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000458 ! ventral thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000307 name: vestibulolateralis lobe namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-235 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000308 name: prevomer namespace: zebrafish_anatomy def: "A thin medial unpaired dermal bone that is kite or paddle-shape. Underlying the ethmoid, and slightly overlapping the parasphenoid posteriorly, the prevomer bears an anterolateral projection that terminates in a concave depression in which the preethmoids sit." [ZFIN:curator] synonym: "vomer" RELATED [ZFIN:ZDB-PUB-961014-192] xref: ZFIN:ZDB-ANAT-011113-236 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! ethmoid region relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000309 name: E-YSL namespace: zebrafish_anatomy def: "The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "external yolk syncytial layer" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-011113-237 relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000088 ! YSL relationship: start ZFS:0000013 ! Blastula:Oblong [Term] id: ZFA:0000310 name: cranial nerve VI namespace: zebrafish_anatomy synonym: "abducens nerve" RELATED [] synonym: "CN-VI" RELATED [] xref: ZFIN:ZDB-ANAT-011113-238 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000311 name: adductor mandibulae complex namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-239 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000236 ! mandibular muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000312 name: mesencephalic nucleus of trigeminal nerve namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-24 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000433 ! sensory trigeminal nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000313 name: anal inclinator namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-240 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001154 ! anal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000314 name: anterior semicircular canal namespace: zebrafish_anatomy def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [ZFIN:curator] synonym: "anterior semicircular canals" RELATED [] xref: ZFIN:ZDB-ANAT-011113-241 relationship: develops_from ZFA:0000469 ! anterior semicircular canal primordia relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000315 name: asteriscus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-242 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000374 ! lagena relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000316 name: basihyal namespace: zebrafish_anatomy def: "The basihyal is the 'tongue' of the a fish, the median and anteriorly projecting element of the ventral hyoid arch.Ossification of the cartilaginous basihyal is first visible at the posterior end of the club-shaped basihyal cartilage (6.0 mm). Ossification spreads throughout the cartilage, except for the anterior tip, which remains cartilaginous. The posteroventral tip extends between the left and right dorsal hypohyals." [ZFIN:curator] synonym: "basihyoid" RELATED [] synonym: "glossohyal" RELATED [] xref: ZFIN:ZDB-ANAT-011113-243 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000317 name: axial skeleton namespace: zebrafish_anatomy def: "The post-cranial structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-244 is_a: ZFA:0000434 ! skeletal system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000318 name: brain stem/spinal tract and commissures namespace: zebrafish_anatomy synonym: "brain stem/spinal tracts and commissures" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-245 is_a: ZFA:0000145 ! CNS tracts and commissures relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000319 name: branchiostegal membrane namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-246 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000320 name: caudal commissure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-247 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000321 name: caudal levator namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-248 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000322 name: caudal octaval nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-249 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000401 ! octaval nerve sensory nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000323 name: ethmoid namespace: zebrafish_anatomy def: "Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the ethmoid remains cartilaginous (Cubbage & Mabee, 1996). The ethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesthmoid meets the preethmoids in synchondroses. " [ZFIN:curator] synonym: "mesethmoid" RELATED [] xref: ZFIN:ZDB-ANAT-011113-25 relationship: develops_from ZFA:0001321 ! neurocranial trabeculae relationship: develops_from ZFA:0001405 ! ethmoid cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! ethmoid region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000324 name: caudal periventricular hypothalamus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-250 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000634 ! caudal zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000325 name: caudal thalamic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-251 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000326 name: caudal vertebrae namespace: zebrafish_anatomy def: "Vertebrae bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae. " [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-252 is_a: ZFA:0001189 ! vertebrae relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000327 name: central zone namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-254 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000328 name: cephalic musculature namespace: zebrafish_anatomy synonym: "head muscles" RELATED [] xref: ZFIN:ZDB-ANAT-011113-255 is_a: ZFA:0000548 ! musculature system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000329 name: chorion namespace: zebrafish_anatomy def: "The egg shell. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-256 is_a: ZFA:0000020 ! extraembryonic structure relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000330 name: cloacal chamber namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-257 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000331 name: commissure infima of Haller namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-258 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000332 name: coracoid namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-259 relationship: develops_from ZFA:0001455 ! scapulocorocoid relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000333 name: mesovarium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-26 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000403 ! ovary relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000334 name: corpus mamillare namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-260 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000335 name: crossed tecto-bulbar tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-261 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000336 name: hypural arches namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-262 is_obsolete: true [Term] id: ZFA:0000337 name: dermopalatine namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-263 is_obsolete: true [Term] id: ZFA:0000338 name: diencephalic tracts and commissures namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-264 is_a: ZFA:0000145 ! CNS tracts and commissures relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000339 name: digestive system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-265 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000340 name: dorsal entopeduncular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-266 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000341 name: dorsal flexor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-267 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000342 name: dorsal inclinator namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-268 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000648 ! dorsal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000343 name: dorsal nucleus of V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-269 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000344 name: middle lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-27 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: part_of ZFA:0005114 ! middle lateral line system relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000345 name: dorsal rectus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-270 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000346 name: dorsal tegmental nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-271 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000347 name: dorsal zone namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-272 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000032 ! hypothalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000348 name: duodenum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-273 is_obsolete: true [Term] id: ZFA:0000349 name: epaxialis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-274 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! body musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000350 name: epipleural namespace: zebrafish_anatomy def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-275 is_a: ZFA:0000526 ! intermuscular bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000351 name: ethmoid region namespace: zebrafish_anatomy synonym: "olfactory region" RELATED [] xref: ZFIN:ZDB-ANAT-011113-276 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000377 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000352 name: external cellular layer namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-277 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000402 ! olfactory bulb relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000353 name: fasciculus retroflexus namespace: zebrafish_anatomy synonym: "habenulointerpeduncular tract" RELATED [] xref: ZFIN:ZDB-ANAT-011113-278 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000354 name: gill namespace: zebrafish_anatomy synonym: "gills" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-279 is_a: ZFA:0000292 ! surface structure is_a: ZFA:0000496 ! organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000272 ! respiratory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000355 name: roof plate midbrain namespace: zebrafish_anatomy synonym: "roof plate midbrain" RELATED [] xref: ZFIN:ZDB-ANAT-011113-28 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000356 name: gill raker namespace: zebrafish_anatomy def: "Gill rakers are small anterior projections present on all of the branchial arches." [ZFIN:curator] synonym: "gill rakers" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-280 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000357 name: glomerular layer namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-281 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000402 ! olfactory bulb relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000358 name: granular layer corpus cerebelli namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-282 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000188 ! corpus cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000359 name: habenular commissure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-283 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000360 name: heart tube namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-284 relationship: develops_from ZFA:0000149 ! primitive heart tube relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000361 name: horizontal namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-285 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000362 name: hypaxialis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-287 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! body musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000363 name: hypobranchial namespace: zebrafish_anatomy def: "Hypobranchials are the most medial of the bilaterally paired elements of the gill arches. Hypobranchial ossifications 1-3 (of 4) develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 2. The hypobranchials articulate anteromedially with the basibranchials." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-288 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000364 name: hypural namespace: zebrafish_anatomy def: "Expanded and laterally flattened hemal arches and spines. They support the lepidotrichia of the caudal fin. The hypurals form ventral to the posterior tip of the dorsally-flexed notochord. In zebrafish condensations of the hypurals begin forming at approximately 6 dpf (4.1 mm NL, notochord length). Mabee and Bird, 2001." [ZFIN:curator] synonym: "hyp" RELATED [] synonym: "hypuralia" RELATED [] synonym: "hypurals" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-289 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000859 ! specialized hemal arch and spine relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000365 name: nasal bone namespace: zebrafish_anatomy def: "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish Cubbage and Mabee, 1996." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-29 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! ethmoid region relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000366 name: inferior raphe nucleus namespace: zebrafish_anatomy synonym: "posterior raphe nucleus" RELATED [] xref: ZFIN:ZDB-ANAT-011113-290 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001429 ! raphe nucleus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000367 name: infraorbital bridge namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-291 is_obsolete: true [Term] id: ZFA:0000368 name: integument namespace: zebrafish_anatomy def: "The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004." [ZFIN:curator] synonym: "skin" RELATED [] xref: ZFIN:ZDB-ANAT-011113-292 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000369 name: intermandibularis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-293 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000236 ! mandibular muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000370 name: intermediate thalamic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-294 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000458 ! ventral thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000371 name: internal pharyngoclavicularis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-295 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000372 name: interpeduncular nucleus medulla oblongata namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-296 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000373 name: juvenile namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-297 is_obsolete: true [Term] id: ZFA:0000374 name: lagena namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-298 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000559 ! otolith organ relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000375 name: last preural centrum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-299 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000376 name: infraorbital namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-3 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001410 ! orbital region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000377 name: neurocranium namespace: zebrafish_anatomy def: "Regional skeletal system surrounding the brain." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-30 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranial skeleton relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000378 name: lateral cristae namespace: zebrafish_anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "lc" RELATED [] synonym: "sensory patches" RELATED [] xref: ZFIN:ZDB-ANAT-011113-300 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000220 ! lateral semicircular canal relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000379 name: lateral forebrain bundle diencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-301 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000380 name: lateral lemniscus nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-302 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000381 name: lateral line sensory nuclei namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-303 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000382 name: acellular anatomical structure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-061101-5 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000383 name: lateral rectus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-305 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000384 name: levator arcus palatini namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-307 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000236 ! mandibular muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000385 name: lymphatic system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-308 is_a: ZFA:0000010 ! cardiovascular system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000386 name: macula namespace: zebrafish_anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "maculae" RELATED PLURAL [] synonym: "sensory patch" RELATED [] xref: ZFIN:ZDB-ANAT-011113-309 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000387 name: nucleus motorius of nervi vagi namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-31 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000388 name: medial caudal lobe namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-311 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000307 ! vestibulolateralis lobe relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000389 name: medial funicular nucleus medulla oblongata namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-312 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000390 name: medial preglomerular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-313 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000391 name: medial zone of D namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-314 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000392 name: median tuberal portion namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-315 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000032 ! hypothalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000393 name: mesenchyme namespace: zebrafish_anatomy def: "A mesh-like cell arrangement, less compact than an epithelium. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-316 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000394 name: molecular layer corpus cerebelli namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-317 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000188 ! corpus cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000395 name: muscle pioneer somite 2 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 2" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-318 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000843 ! slow muscle cell somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000396 name: nervous system namespace: zebrafish_anatomy def: "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-319 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000397 name: nucleus subglomerulosis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-32 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000398 name: nucleus isthmi namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-320 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000399 name: secondary gustatory nucleus trigeminal nuclei namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-321 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000433 ! sensory trigeminal nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000400 name: occipital lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "supratemporal lateral line" RELATED [] xref: ZFIN:ZDB-ANAT-011113-322 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000401 name: octaval nerve sensory nuclei namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-323 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000402 name: olfactory bulb namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-324 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: part_of ZFA:0001149 ! olfactory system relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000403 name: ovary namespace: zebrafish_anatomy def: "Female reproductive organ." [ZFIN:curator] synonym: "ovaries" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-328 is_a: ZFA:0000413 ! gonad relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000303 ! female organism relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0000404 name: paracommissural nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-329 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000405 name: cranial nerve III namespace: zebrafish_anatomy synonym: "CN-III" RELATED [] synonym: "occulomotor" RELATED [] synonym: "oculomotor nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-33 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000406 name: parvocellular superficial pretectal nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-330 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000687 ! superficial pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000407 name: pectoral girdle namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-331 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000943 ! pectoral fin skeleton relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000408 name: periventricular nucleus of caudal tuberculum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-333 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000410 name: postcleithrum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-335 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000411 name: posterior crista primordia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-336 relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000262 ! posterior semicircular canal relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000412 name: posterior semicircular canal primordia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-337 relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000413 name: gonad namespace: zebrafish_anatomy def: "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060816-1 is_a: ZFA:0000496 ! organ relationship: develops_from ZFA:0001262 ! gonad primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000632 ! reproductive system relationship: part_of ZFA:0001438 ! coelom relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000414 name: presumptive cephalic mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-339 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000415 name: esophageal sphincter namespace: zebrafish_anatomy synonym: "oesophagial sphincter" RELATED [] xref: ZFIN:ZDB-ANAT-011113-34 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000416 name: presumptive endoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-340 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000019 ! Gastrula:Shield relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000417 name: presumptive spinal cord namespace: zebrafish_anatomy synonym: "presumptive spinal cord neural keel" RELATED [] synonym: "presumptive spinal cord neural plate" RELATED [] synonym: "presumptive spinal cord neural rod" RELATED [] xref: ZFIN:ZDB-ANAT-011113-343 relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000061 ! presumptive central nervous system relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000418 name: pretectum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-344 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000419 name: pterosphenoid namespace: zebrafish_anatomy def: "Paired cartilage bones, flat and hexagonal in shape that contact the orbitosphenoid anteriorly. Roofed by the frontal and bordered posteriorly by the prootic and sphenotic, the pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-345 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000290 ! sphenoid region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000420 name: renal artery namespace: zebrafish_anatomy synonym: "renal arteries" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-346 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000421 name: reticular formation namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-347 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000422 name: retroarticular namespace: zebrafish_anatomy def: "The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-348 relationship: develops_from ZFA:0001205 ! Meckel's cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000423 name: anterior cardinal vein namespace: zebrafish_anatomy synonym: "ACV" RELATED [] synonym: "rostral cardinal veins" RELATED [] xref: ZFIN:ZDB-ANAT-011113-349 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000096 ! cardinal system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000424 name: opercular lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-35 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000425 name: anterior lateral line nerve namespace: zebrafish_anatomy def: "Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia." [ZFIN:curator] synonym: "rostral lateral line nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-350 is_a: ZFA:0000641 ! cranial nerve is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001468 ! anterior lateral line system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000426 name: rostral parvocellular preoptic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-351 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000470 ! preoptic area relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000427 name: rostral thalamic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-352 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000653 ! dorsal thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000428 name: saccule namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-353 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000559 ! otolith organ relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000429 name: scaphium namespace: zebrafish_anatomy def: "The scaphium is a modification of NA 1 in which the neural arch is reduced and fused to a cup-shaped ossification of membrane bone, the concha. The second Weberian ossicle, consisting of three parts: the concha, the ascending process, and the articulating process." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-354 is_a: ZFA:0001066 ! neural arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: part_of ZFA:0001167 ! vertebra 1 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000430 name: secondary gustatory tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-355 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000431 name: semicircular canal namespace: zebrafish_anatomy def: "Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [ZFIN:curator] synonym: "scc" RELATED [] synonym: "semicircular canals" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-356 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000433 name: sensory trigeminal nuclei namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-358 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000434 name: skeletal system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-359 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000435 name: cranial nerve II namespace: zebrafish_anatomy def: "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] synonym: "CN-II" RELATED [] synonym: "optic" RELATED [] synonym: "optic nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-36 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000436 name: spleen namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-360 is_a: ZFA:0000496 ! organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: part_of ZFA:0001159 ! immune system relationship: part_of ZFA:0001438 ! coelom relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000437 name: stomach namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-361 is_obsolete: true [Term] id: ZFA:0000438 name: parhypural namespace: zebrafish_anatomy def: "Hemal arch and spine of preural centrum 1. The parhypural is defined as the most posterior hemal arch with an open canal through which the ventral aorta passes. Mabee and Bird, 2001." [ZFIN:curator] synonym: "phy" RELATED [] xref: ZFIN:ZDB-ANAT-011113-363 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000859 ! specialized hemal arch and spine relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000439 name: superficial pelvic abductor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-364 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000440 name: superior raphe nucleus namespace: zebrafish_anatomy synonym: "anterior raphe nucleus" RELATED [] xref: ZFIN:ZDB-ANAT-011113-365 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001429 ! raphe nucleus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000441 name: suprachiasmatic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-366 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000183 ! central pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000442 name: supraneural namespace: zebrafish_anatomy def: "Supraneurals independent, median, elongate, rod-like cartilages or bones in the dorsal skeletogenous septum between the cranium and the dorsal fin. In actinopterygians, supraneurals develop from cartilages that are independent of the neural spine (Arratia et al., 2001)." [ZFIN:curator] synonym: "sn" RELATED [] xref: ZFIN:ZDB-ANAT-011113-367 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! axial skeleton relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000443 name: supraorbital lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-368 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000444 name: suspensoria namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-369 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000445 name: optic tectum namespace: zebrafish_anatomy def: "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "dorsal midbrain" RELATED [] synonym: "tectum" RELATED [ZFIN:ZDB-PUB-961014-576] synonym: "tectum opticum" RELATED [] xref: ZFIN:ZDB-ANAT-011113-37 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001353 ! mesencephalic tectum relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000446 name: tecto-bulbar tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-370 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000447 name: tela chorioidea namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-371 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000696 ! telencephalic ventricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000448 name: tertiary gustatory nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-372 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000449 name: torus longitudinalis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-373 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001353 ! mesencephalic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000450 name: trochlear motor nucleus namespace: zebrafish_anatomy synonym: "motor nucleus IV" RELATED [] synonym: "nIV" RELATED [] xref: ZFIN:ZDB-ANAT-011113-374 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000451 name: upper oral valve namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-375 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000695 ! labial cavities relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000452 name: urohyal namespace: zebrafish_anatomy def: "The urohyal is a median dermal bone that ossifies in the membrane between the paired sternohyoideus muscles ventral to the anterior end of copula 1. It is an unpaired ossification of the tendon of the sternohyoideos muscles in basal teleosts, and it is paired in catfishes (Arratia and Schultze, 1990)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-376 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000453 name: cranial nerve X namespace: zebrafish_anatomy synonym: "CN-X" RELATED [] synonym: "vagal nerve" RELATED [] synonym: "vagus nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-377 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000454 name: ventral accessory optic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-378 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000183 ! central pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000455 name: ventral flexor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-379 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000456 name: ventral nucleus of V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-380 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000457 name: ventral rectus namespace: zebrafish_anatomy synonym: "ventral recti" RELATED [] xref: ZFIN:ZDB-ANAT-011113-381 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000458 name: ventral thalamus namespace: zebrafish_anatomy synonym: "prethalamus" RELATED [ZFIN:ZDB-PUB-060207-11] xref: ZFIN:ZDB-ANAT-011113-382 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001215 ! thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000459 name: ventromedial thalamic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-384 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000458 ! ventral thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000460 name: Mauthner axon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-386 is_obsolete: true [Term] id: ZFA:0000461 name: Weberian ossicle namespace: zebrafish_anatomy def: "A group of modified neural arches and spines of the first four vertebrae. These include, from anterior to posterior, the claustrum, scaphuium, intercalarium, and tripus. The os suspensorium is considered to be a fifth ossicle. Mabee and Bird, 2001." [ZFIN:curator] synonym: "Weberian ossicles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-387 is_a: ZFA:0000015 ! anatomical set relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001188 ! Weberian apparatus relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000462 name: abductor hyohyoid namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-388 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000521 ! hyoid muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000463 name: adductor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-389 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000464 name: otic lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-39 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000465 name: adductor operculi namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-390 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000521 ! hyoid muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000466 name: anal depressor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-391 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001154 ! anal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000467 name: anguloarticular namespace: zebrafish_anatomy def: "The anguloarticular is a compound bone that results of the fusion of the dermal angular and the cartilaginous articular and forms the posterior part of the lower jaw. The dermal part ossifies initially on the posterolateral surface of Meckel's cartilage near the articulation with the quadrate (5.5 mm NL). A posterior process forms, creating a synovial joint with the quadrate." [ZFIN:curator] synonym: "articular" RELATED [] xref: ZFIN:ZDB-ANAT-011113-392 relationship: develops_from ZFA:0001205 ! Meckel's cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000468 name: anterior crista primordia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-393 relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000314 ! anterior semicircular canal relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000469 name: anterior semicircular canal primordia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-394 relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000470 name: preoptic area namespace: zebrafish_anatomy synonym: "area praeoptica" RELATED [] synonym: "area preoptica" RELATED [] xref: ZFIN:ZDB-ANAT-011113-395 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000471 name: atrium namespace: zebrafish_anatomy def: "One of four heart chambers." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-396 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0000472 name: basioccipital namespace: zebrafish_anatomy def: "Large median unpaired cartilage bone that contacts the exocciptal, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-397 relationship: develops_from ZFA:0001423 ! parachordal cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001414 ! occipital region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000473 name: body musculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-399 is_a: ZFA:0000548 ! musculature system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000474 name: intercalar namespace: zebrafish_anatomy def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [ZFIN:curator] synonym: "opisthotic" RELATED [] xref: ZFIN:ZDB-ANAT-011113-4 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000189 ! otic region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000475 name: paraventricular organ namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-40 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000476 name: branchiostegal ray namespace: zebrafish_anatomy def: "Branchiostegal rays are thin dermal bones that support the branchiostegal membrane. Three dermal branchiostegal rays form in the branchiostegal membrane ventral to the ceratohyal cartilage. The most posterior ray, branchiostegal 3, ossifies first (3.4 mm NL), and the most anterior ray, branchiostegal 1, ossifies last (5.5 mm NL). The most posterior two branchiostegals (2 and 3) insert externally on the ceratohyal; their anterodorsal tips are thickened triangles, and the rays are expanded. The bifurcated tip of the acinaciform anteriormost ray lies at the ventral margin of the ceratohyal." [ZFIN:curator] synonym: "branchiostegal rays" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-400 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000477 name: posterior cardinal vein namespace: zebrafish_anatomy def: "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. " [ZFIN:curator] synonym: "axial vein" RELATED [] synonym: "caudal cardinal veins" RELATED [] synonym: "PCV" RELATED [] synonym: "postcardinal vein" RELATED [] xref: ZFIN:ZDB-ANAT-011113-401 is_a: ZFA:0000082 ! vein relationship: develops_from ZFA:0005077 ! vascular cord relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000096 ! cardinal system relationship: part_of ZFA:0001073 ! axial vasculature relationship: part_of ZFA:0005024 ! trunk vasculature relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000478 name: caudal crista namespace: zebrafish_anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "sensory patch" RELATED [] xref: ZFIN:ZDB-ANAT-011113-402 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000483 ! caudal vertical relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000479 name: caudal mesencephalo-cerebellar tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-403 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000480 name: caudal octavolateralis nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-404 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000381 ! lateral line sensory nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000481 name: caudal preglomerular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-405 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000482 name: caudal tuberal nucleus namespace: zebrafish_anatomy synonym: "posterior tuberal nucleus" RELATED [] xref: ZFIN:ZDB-ANAT-011113-406 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000483 name: caudal vertical namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-407 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000484 name: celiacomesenteric artery namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-408 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000485 name: central nucleus inferior lobe namespace: zebrafish_anatomy synonym: "central nucleus inferior lobes" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-409 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000165 ! inferior lobe relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000486 name: parietal bone namespace: zebrafish_anatomy def: "Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal." [ZFIN:curator] synonym: "post parietal" RELATED [] xref: ZFIN:ZDB-ANAT-011113-41 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000487 name: central zone of D namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-410 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000488 name: ceratobranchial namespace: zebrafish_anatomy def: "Ceratobranchials are bilaterally paired cartilage bones that form part of the ventral branchial arches. They articulate medially with the hypobranchials and laterally and dorsally with the epibranchials. Ceratobranchials 1-5 ossify in the ceratobranchial cartilages." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-411 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000489 name: circumorbital series namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-412 is_obsolete: true [Term] id: ZFA:0000490 name: commissura cerebelli namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-413 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000491 name: commissure of the caudal tuberculum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-414 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000492 name: coracoradialis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-415 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000493 name: decussation of medial funicular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-416 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000494 name: deep white zone namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-417 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000495 name: infraorbital 5 namespace: zebrafish_anatomy def: "Plate like dermal bone with usually only one neuromast pore (Nelson, 1969). The last infraorbital bone in the series is referred to as the dermosphenotic (Nelson, 1969). In basal teleosts it is usually the sixth bone in the series but in zebrafish it is the fifth bone." [ZFIN:curator] synonym: "dermosphenotic" RELATED [] xref: ZFIN:ZDB-ANAT-011113-418 is_a: ZFA:0000376 ! infraorbital relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000496 name: organ namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-061101-6 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001094 ! whole organism relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000497 name: pelvic adductor profundus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-42 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000498 name: dilator operculi namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-420 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000236 ! mandibular muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000499 name: dorsal arrector namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-421 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000500 name: dorsal erector namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-422 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000648 ! dorsal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000501 name: dorsal funiculus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-423 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000502 name: dorsal motor nucleus trigeminal nerve namespace: zebrafish_anatomy synonym: "motor nucleus V" RELATED [] synonym: "nV" RELATED [] xref: ZFIN:ZDB-ANAT-011113-424 is_a: ZFA:0001365 ! trigeminal motor nuclei relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000503 name: dorsal oblique branchial muscle namespace: zebrafish_anatomy synonym: "dorsal oblique branchial muscles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-425 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000504 name: dorsal retractor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-426 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000505 name: dorsal telencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-427 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000506 name: dorsal zone of D namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-428 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000507 name: epineural namespace: zebrafish_anatomy def: "Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g., Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-429 is_a: ZFA:0000526 ! intermuscular bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000508 name: pelvic radials namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-43 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000565 ! pelvic girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000509 name: epithalamus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-430 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000510 name: external levatores namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-432 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000511 name: extraocular musculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-433 is_a: ZFA:0000328 ! cephalic musculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000512 name: facial lobe namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-434 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000513 name: fast muscle cell somite 1 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 1" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-435 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000924 ! myotome somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000514 name: frontal bone namespace: zebrafish_anatomy def: "Large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-436 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000377 ! neurocranium relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000515 name: gill arch namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-438 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000516 name: periventricular grey zone namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-44 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000517 name: glossopharyngeal lobe namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-440 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000518 name: griseum centrale namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-441 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000519 name: hemal arch namespace: zebrafish_anatomy def: "Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone." [ZFIN:curator] synonym: "ventral arcocentrum" RELATED [] xref: ZFIN:ZDB-ANAT-011113-442 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001361 ! basiventral relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000520 name: horizontal commissure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-443 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000521 name: hyoid muscle namespace: zebrafish_anatomy synonym: "hyoid muscles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-444 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001307 ! pharyngeal musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000522 name: inferior hyohyoid namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-445 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000521 ! hyoid muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000523 name: inferior reticular formation namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-446 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000542 ! medial column relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000524 name: infraorbital lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-447 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000525 name: intercalarium namespace: zebrafish_anatomy def: "Third Weberian ossicle. The intercalarium is a Y- or T-shaped modification of neural arch 2 in which an anterolateral process (the manubrium) is embedded in the interossicular ligament; other parts include the ascending and articulating processes. Bird and Mabee, 2003." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-448 is_a: ZFA:0001066 ! neural arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: part_of ZFA:0001168 ! vertebra 2 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000526 name: intermuscular bone namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-449 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! axial skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000527 name: pharyngobranchial namespace: zebrafish_anatomy def: "The pharyngobranchials are the dorsalmost bones of the branchial arches located immediately dorsal and medial to the epibranchials." [ZFIN:curator] synonym: "infrapharyngobranchial" RELATED [] xref: ZFIN:ZDB-ANAT-011113-45 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000528 name: interradialis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-450 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000529 name: kidney namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-451 is_a: ZFA:0000496 ! organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000163 ! renal system relationship: part_of ZFA:0001159 ! immune system relationship: part_of ZFA:0001438 ! coelom relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000530 name: lapillus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-452 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000700 ! utricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000531 name: lateral column namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-453 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000421 ! reticular formation relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000532 name: lateral division namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-454 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000533 name: lateral funiculus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-455 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000534 name: lateral longitudinal fasciculus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-456 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000535 name: lateral reticular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-457 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000531 ! lateral column relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000536 name: lateral zone of D namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-458 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000537 name: levator operculi namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-459 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000521 ! hyoid muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000538 name: rib namespace: zebrafish_anatomy def: "Ribs are intersegmental rod-shaped bones that form in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs." [ZFIN:curator] synonym: "dorsal rib" RELATED [] synonym: "pleural rib" RELATED [] xref: ZFIN:ZDB-ANAT-011113-46 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! axial skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000539 name: locus coeruleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-460 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000540 name: magnocellular octavl nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-461 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000401 ! octaval nerve sensory nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000541 name: marginal blastomere namespace: zebrafish_anatomy def: "Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. Kimmel et al, 1995." [ZFIN:curator] synonym: "marginal blastomeres" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-462 is_a: ZFA:0000093 ! blastomere relationship: end ZFS:0000015 ! Blastula:Dome relationship: start ZFS:0000005 ! Cleavage:16-cell [Term] id: ZFA:0000542 name: medial column namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-463 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000421 ! reticular formation relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000543 name: medial longitudinal fasciculus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-464 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000544 name: medial pterygiophores anal fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-465 is_obsolete: true [Term] id: ZFA:0000545 name: medulla oblongata namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-466 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000546 name: mesonephric duct namespace: zebrafish_anatomy synonym: "Wolffian duct" RELATED [] xref: ZFIN:ZDB-ANAT-011113-467 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000163 ! renal system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000547 name: mouth namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-468 is_a: ZFA:0000292 ! surface structure relationship: develops_from ZFA:0001290 ! stomodeum relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000548 name: musculature system namespace: zebrafish_anatomy synonym: "muscle" RELATED [] synonym: "muscles" RELATED [] xref: ZFIN:ZDB-ANAT-011113-469 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000549 name: posttemporal namespace: zebrafish_anatomy synonym: "postemporal" RELATED [] xref: ZFIN:ZDB-ANAT-011113-47 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0000407 ! pectoral girdle relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000550 name: naris namespace: zebrafish_anatomy synonym: "nares" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-470 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000047 ! peripheral olfactory organ relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000551 name: nucleus lateralis valvulae namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-471 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000552 name: nucleus ruber namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-472 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000553 name: oculomotor nucleus namespace: zebrafish_anatomy synonym: "motor nucleus III" RELATED [] synonym: "nIII" RELATED [] xref: ZFIN:ZDB-ANAT-011113-474 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000554 name: olfactory epithelium namespace: zebrafish_anatomy def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located." [ZFIN:curator] synonym: "nasal epithelium" RELATED [] synonym: "nasal sensory epithelium" RELATED [] xref: ZFIN:ZDB-ANAT-011113-475 relationship: develops_from ZFA:0001431 ! primitive olfactory epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000047 ! peripheral olfactory organ relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000555 name: opercular flap namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-476 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000556 name: optic chiasm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-477 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000557 name: preural 1 namespace: zebrafish_anatomy def: "Vertebra anterior to the urostyle; sometimes termed the 'penultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator] synonym: "penultimate vertebra" RELATED [] synonym: "preural centrum 1" RELATED [] synonym: "pu1" RELATED [] synonym: "second last vertebra" RELATED [] xref: ZFIN:ZDB-ANAT-011113-479 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000734 ! specialized centra/vertebra relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000558 name: posterior macula namespace: zebrafish_anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "pm" RELATED [] synonym: "posteromedial macula" RELATED [] synonym: "sensory patch" RELATED [] xref: ZFIN:ZDB-ANAT-011113-48 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000386 ! macula relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000559 name: otolith organ namespace: zebrafish_anatomy synonym: "otolith organs" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-480 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000560 name: oviduct namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-481 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000303 ! female organism relationship: part_of ZFA:0000632 ! reproductive system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000561 name: parasphenoid namespace: zebrafish_anatomy def: "Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the vomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-482 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000377 ! neurocranium relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000562 name: parhyural namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-483 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000563 name: pectoral fin musculature namespace: zebrafish_anatomy synonym: "pectoral fin muscle" RELATED [] xref: ZFIN:ZDB-ANAT-011113-484 is_a: ZFA:0000207 ! fin musculature relationship: develops_from ZFA:0001000 ! mesenchyme pectoral fin relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0000564 name: pelvic abductor profundus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-485 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000565 name: pelvic girdle namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-486 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001387 ! pelvic fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000566 name: posterior cristae namespace: zebrafish_anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "pc" RELATED [] synonym: "sensory patches" RELATED [] xref: ZFIN:ZDB-ANAT-011113-490 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000262 ! posterior semicircular canal relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000567 name: premaxilla namespace: zebrafish_anatomy def: "The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish." [ZFIN:curator] synonym: "premaxillae" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-492 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001272 ! dorsal mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000568 name: presumptive blood namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-493 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000569 name: presumptive hindbrain namespace: zebrafish_anatomy synonym: "presumptive rhombencephalon" RELATED [] xref: ZFIN:ZDB-ANAT-011113-495 relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000146 ! presumptive brain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000570 name: optic primordium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-496 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000062 ! presumptive forebrain relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000571 name: presumptive telencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-497 relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000062 ! presumptive forebrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000573 name: internal cellular layer namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-5 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000402 ! olfactory bulb relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000574 name: presumptive diencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-50 relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000062 ! presumptive forebrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000575 name: prootic namespace: zebrafish_anatomy def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. Bear foramina that accommodate branches of the trigeminal and facial nerves." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-500 relationship: develops_from ZFA:0001423 ! parachordal cartilage relationship: develops_from ZFA:0001425 ! basal plate cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000576 name: autopterotic namespace: zebrafish_anatomy def: "Paired cartilage bone that contacts the autosphenotic anteriorly, the parietal dorsally, the prootic ventrally, and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet." [ZFIN:curator] synonym: "pterotic" RELATED [] xref: ZFIN:ZDB-ANAT-011113-501 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000577 name: renal portal vein namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-502 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005024 ! trunk vasculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000578 name: ceratohyal namespace: zebrafish_anatomy def: "The ceratohyal begins as a ossification in the anterior portion of the ceratohyal cartilage (4.6 mm NL). The posterior end broadens and meets the epihyal in a pad of cartilage. The anterior end broadens and terminates in two heads (8.8 mm). The anterodorsal head forms a synchondrosis with the dorsal hypohyal and the anteroventral head forms a synchondrosis with the ventral hypohyal. All of the branchiostegal rays articulate with the ventral edge of the ceratohyal." [ZFIN:curator] synonym: "anterior ceratohyal" RELATED [] synonym: "rostral ceratohyal" RELATED [] xref: ZFIN:ZDB-ANAT-011113-505 relationship: develops_from ZFA:0001400 ! ceratohyal cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000579 name: rostral mesencephalo-cerebellar tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-506 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000580 name: rostral preglomerular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-507 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000581 name: rostral tuberal nucleus namespace: zebrafish_anatomy synonym: "anterior tuberal nucleus" RELATED [] xref: ZFIN:ZDB-ANAT-011113-508 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000707 ! ventral zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000582 name: saccus dorsalis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-509 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000509 ! epithalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000583 name: scapula namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-510 relationship: develops_from ZFA:0001455 ! scapulocorocoid relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000586 name: preural 2 namespace: zebrafish_anatomy def: "Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator] synonym: "antepenultimate vertebra" RELATED [] synonym: "preural centrum 2" RELATED [] synonym: "pu2" RELATED [] synonym: "third last vertebra" RELATED [] xref: ZFIN:ZDB-ANAT-011113-514 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000734 ! specialized centra/vertebra relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000587 name: autosphenotic namespace: zebrafish_anatomy def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the prootic ventrally, and the pterotic posteriorly. Roofed by the frontal bone anteriorly and the parietal bone posteriorly, the sphenotic bears a large anterolateral process that borders the posterodorsal margain of the orbit. The lower edge of the sphenotic contributes to the hyomandibular facet." [ZFIN:curator] synonym: "sphenotic" RELATED [] xref: ZFIN:ZDB-ANAT-011113-515 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000588 name: statoacoustic (VIII) ganglion namespace: zebrafish_anatomy def: "The sensory ganglion of the ear. (See Anatomical Atlas entry for statoacoustic ganglion by T. Whitfield.)" [ZFIN:curator] synonym: "auditory ganglion" RELATED [] synonym: "gVIII" RELATED [] synonym: "sag" RELATED [] synonym: "statoacoustic ganglia" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-516 is_a: ZFA:0000013 ! cranial ganglia relationship: develops_from ZFA:0000138 ! otic placode relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001138 ! vestibuloauditory system relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000589 name: sulcus ypsiloniformis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-518 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000590 name: oral region namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-519 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000547 ! mouth relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000591 name: presumptive paraxial mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-52 relationship: end ZFS:0000021 ! Gastrula:90%-epiboly relationship: part_of ZFA:0001377 ! presumptive mesoderm relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000592 name: superficial pelvic adductor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-520 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000593 name: superior reticular formation medial column namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-521 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000542 ! medial column relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000594 name: supracleithrum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-522 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000595 name: supraoccipital namespace: zebrafish_anatomy def: "Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exocciptial and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-523 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001414 ! occipital region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000596 name: supraorbital series namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-524 is_obsolete: true [Term] id: ZFA:0000597 name: telencephalic tracts namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-525 is_a: ZFA:0000145 ! CNS tracts and commissures relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000598 name: testis namespace: zebrafish_anatomy def: "Male reproductive organ." [ZFIN:curator] synonym: "testes" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-526 is_a: ZFA:0000413 ! gonad relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000242 ! male organism relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000599 name: torus semicircularis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-527 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001353 ! mesencephalic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000600 name: cranial nerve IV namespace: zebrafish_anatomy synonym: "CN-IV" RELATED [] synonym: "trochlear" RELATED [] synonym: "trochlear nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-528 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000601 name: pretectal periventricular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-53 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000602 name: uroneural namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-530 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000603 name: valvula cerebelli namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-531 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000604 name: ventral aorta namespace: zebrafish_anatomy def: "Outflow artery from the heart to the aortic arches. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-532 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000605 name: ventral funiculus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-533 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000606 name: ventral oblique branchial muscle namespace: zebrafish_anatomy synonym: "ventral oblique branchial muscles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-534 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000607 name: ventral rhombencephalic commissure brain stem namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-535 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000608 name: ventral transverse namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-536 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000609 name: ventrolateral nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-537 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000599 ! torus semicircularis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000610 name: vertical myoseptum namespace: zebrafish_anatomy def: "Connective tissue partitions developing between the myotomes . Kimmel et al, 1995." [ZFIN:curator] synonym: "transverse myoseptum" RELATED [] xref: ZFIN:ZDB-ANAT-011113-538 is_a: ZFA:0001089 ! myoseptum relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000611 name: visceromotor column namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-539 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000612 name: protractor hyoidei namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-54 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000521 ! hyoid muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000614 name: abductor profundus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-542 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000615 name: adductor arcus palatini namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-543 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000521 ! hyoid muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000616 name: adductor profundus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-544 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000617 name: anal erector namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-545 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001154 ! anal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000618 name: ansulate commissure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-546 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000619 name: anterior cristae namespace: zebrafish_anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "ac" RELATED [] synonym: "sensory patches" RELATED [] xref: ZFIN:ZDB-ANAT-011113-547 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000314 ! anterior semicircular canal relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000620 name: autopalatine namespace: zebrafish_anatomy def: "The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms)." [ZFIN:curator] synonym: "palatine" RELATED [] xref: ZFIN:ZDB-ANAT-011113-549 relationship: develops_from ZFA:0001399 ! palatoquadrate cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001272 ! dorsal mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000621 name: quadrate namespace: zebrafish_anatomy def: "The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-55 relationship: develops_from ZFA:0001399 ! palatoquadrate cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001272 ! dorsal mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000622 name: barble namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-550 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000623 name: basipterygium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-551 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000565 ! pelvic girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000624 name: brachium conjunctivium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-552 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000625 name: branchial bar namespace: zebrafish_anatomy synonym: "branchial bars" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-553 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000626 name: bulbo-spinal tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-554 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000627 name: epihyal namespace: zebrafish_anatomy def: "The cartilaginous epihyal begins ossifying on the anterior surface of the posterior end of the ceratohyal cartilage near the site of articulation with the interhyal (5.8 mm). It joins the ceratohyal in a pad of persisting cartilage." [ZFIN:curator] synonym: "caudal ceratohyal" RELATED [] synonym: "posterior ceratohyal" RELATED [] xref: ZFIN:ZDB-ANAT-011113-555 relationship: develops_from ZFA:0001400 ! ceratohyal cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000628 name: caudal fin musculature namespace: zebrafish_anatomy def: "The caudal fin is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. Mabee and Bird, 2001." [ZFIN:curator] synonym: "tail fin" RELATED [] xref: ZFIN:ZDB-ANAT-011113-556 is_a: ZFA:0000207 ! fin musculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001058 ! caudal fin relationship: part_of ZFA:0001117 ! tail relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000629 name: caudal motor nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-557 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000713 ! abducens motor nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000630 name: caudal parvocellular preoptic nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-558 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000470 ! preoptic area relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000631 name: caudal pretectal nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-559 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000687 ! superficial pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000632 name: reproductive system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-56 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000633 name: caudal tuberculum namespace: zebrafish_anatomy synonym: "posterior tubercle" RELATED [] synonym: "posterior tuberculum" RELATED [] xref: ZFIN:ZDB-ANAT-011113-560 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000634 name: caudal zone namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-561 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000392 ! median tuberal portion relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000635 name: central pretectal nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-562 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000183 ! central pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000636 name: cerebellar crest namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-563 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000291 ! medial octavolateralis nucleus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000637 name: claustrum namespace: zebrafish_anatomy def: "The claustrum is a bilaterally paired cartilage or cartilage replacement bone with extensions of membrane bone forming part of a dorsolateral protective wall around the neural canal between the back of the skull and the beginning of the neural arch series. The first Weberian ossicle. Most recently, de Pinna and Grande (2003) have proposed the claustrum is homologous to the accessory neural arch of lower teleosts." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-564 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000638 name: commissura rostral, pars dorsalis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-565 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001108 ! anterior commissure relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000639 name: commissure of the secondary gustatory nuclei namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-566 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000640 name: cornea namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-567 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0000641 name: cranial nerve namespace: zebrafish_anatomy def: "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [ZFIN:curator] synonym: "cranial nerves" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-568 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000642 name: decussation of the medial octavolateralis nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-569 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000381 ! lateral line sensory nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000643 name: rostral cerebellar tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-57 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000644 name: dental plate namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-570 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000547 ! mouth relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000645 name: descending octaval nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-571 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000401 ! octaval nerve sensory nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000646 name: anal fin distal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-572 is_a: ZFA:0001420 ! anal fin radial relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000647 name: dorsal caudal thalamic nucleus namespace: zebrafish_anatomy synonym: "dorsal posterior thalamic nucleus" RELATED [] xref: ZFIN:ZDB-ANAT-011113-573 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000653 ! dorsal thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000648 name: dorsal fin musculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-574 is_a: ZFA:0000207 ! fin musculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001173 ! dorsal fin relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000649 name: dorsal horn spinal cord namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-575 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000650 name: dorsal motor root of V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-576 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000651 name: dorsal pelvic arrector namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-577 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000652 name: dorsal root namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-578 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000653 name: dorsal thalamus namespace: zebrafish_anatomy synonym: "thalamus" RELATED [ZFIN:ZDB-PUB-060207-11] xref: ZFIN:ZDB-ANAT-011113-579 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001215 ! thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000654 name: rostral motor nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-58 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000713 ! abducens motor nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000655 name: dorsomedial optic tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-580 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000252 ! optic tract relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000656 name: ectopterygoid namespace: zebrafish_anatomy def: "The ectopterygoid is dermal bone located at the anterior part of the palatoquadrate. It is first visible as a very thin ossification along the anteroventral border of the palatoquadrate cartilage (6.4 mm). In adults it is a long sliver of bone that is narrow anteriorly where it meets the entopterygoid in a synostosis. It is slightly wider at its posterior synostosis with the quadrate." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-581 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001272 ! dorsal mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000657 name: entopterygoid namespace: zebrafish_anatomy def: "The entopterygoid is a dermal bone that forms the anteroventral and ventral surface of the orbit. It develops as a long sliver of bone developing in the membrane dorsomedial to the palatoquadrate cartilage (3.8 mm NL)." [ZFIN:curator] synonym: "endopterygoid" RELATED [] synonym: "mesopterygoid" RELATED [] xref: ZFIN:ZDB-ANAT-011113-582 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001272 ! dorsal mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000658 name: epibranchial namespace: zebrafish_anatomy def: "Epibranchials are dorsal parts of the gill arches. Epibranchials 1-4 ossify in the epibranchial cartilages in a posterior to anterior progression. The cartilaginous tips of the epibranchials articulate laterally with the cartilaginous tips of the ceratobranchials. Gill rakers are present on the anterior and posterior edges of epibranchials 2 4 and the posterior edge of epibranchial 1. A reduced gill raker is present on the anterior margin of epibranchial 1 in some specimens." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-583 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000659 name: epioccipitals namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-584 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000189 ! otic region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000660 name: epural namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-585 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000661 name: exoccipital namespace: zebrafish_anatomy def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-586 relationship: develops_from ZFA:0001423 ! parachordal cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001414 ! occipital region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000662 name: external pharyngoclavicularis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-587 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000172 ! branchial muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000663 name: extrascapular namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-588 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000664 name: cranial nerve VII namespace: zebrafish_anatomy synonym: "CN-VII" RELATED [] synonym: "facial nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-589 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000665 name: rostral root of abducens nerve namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-59 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000666 name: filamental artery namespace: zebrafish_anatomy synonym: "filamental arteries" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-590 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000667 ! gill filament relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000667 name: gill filament namespace: zebrafish_anatomy def: "Branched region of the gill where respiratory exchange takes place. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-592 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000668 name: cranial nerve IX namespace: zebrafish_anatomy synonym: "CN-IX" RELATED [] synonym: "glossopharyngeal nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-594 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000669 name: head kidney namespace: zebrafish_anatomy def: "The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. Davidson and Zon 2004." [ZFIN:curator] synonym: "anterior kidney" RELATED [] synonym: "kidney marrow" RELATED [] xref: ZFIN:ZDB-ANAT-011113-595 is_a: ZFA:0000496 ! organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: part_of ZFA:0001158 ! endocrine system relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000670 name: hepatic vein namespace: zebrafish_anatomy synonym: "hepatic veins" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-596 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000671 name: horizontal myoseptum namespace: zebrafish_anatomy def: "A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-597 is_a: ZFA:0001089 ! myoseptum relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000672 name: hyomandibula namespace: zebrafish_anatomy def: "The hyomandibula is the large, dorsal-most member of the hyoid arch. It begins ossifying in the dorsal edge of the hyosymplectic cartilage near the hyomandibular foramen (4.6 mm NL). Ossification spreads through the cartilage, and sheets of membrane bone form off the cartilage model anteriorly and posteriorly (6.6 mm). In the adult, the hyomandibula has cartilage-capped anterior and posterior articulating heads that meet the sphenotic-prootic fossa and the pterotic fossa, respectively, in synovial joints. A posterior knob of bone develops, also capped in cartilage, and it forms a synovial joint with the opercle." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-598 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000673 name: hypobranchial artery namespace: zebrafish_anatomy def: "A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart.Isogai et al. 2001." [ZFIN:curator] synonym: "HA" RELATED [] xref: ZFIN:ZDB-ANAT-011113-599 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0005005 ! aortic arch 1 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000674 name: interopercle namespace: zebrafish_anatomy synonym: "interopercles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-6 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000675 name: rostral vertical namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-60 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000676 name: sagitta namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-61 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000428 ! saccule relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000677 name: segmental intercostal artery namespace: zebrafish_anatomy synonym: "segmental intercostal arteries" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-62 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000678 name: sensory hair cell anterior macula namespace: zebrafish_anatomy def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:curator] synonym: "sensory hair cells anterior macula" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-63 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000168 ! anterior macula relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000679 name: sensory root of facial nerve namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-64 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000680 name: sinoatrial valve namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-65 is_a: ZFA:0005065 ! heart valve relationship: develops_from ZFA:0001317 ! endocardial cushion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000154 ! sinus venosus relationship: part_of ZFA:0000471 ! atrium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000681 name: neural postzygapophyses namespace: zebrafish_anatomy def: "Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-3 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000126 ! centrum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000682 name: spinal artery namespace: zebrafish_anatomy synonym: "spinal arteries" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-67 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000683 name: subcommissural organ namespace: zebrafish_anatomy synonym: "SCO" RELATED [] xref: ZFIN:ZDB-ANAT-011113-69 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000684 name: intertectal commissure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-7 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000685 name: superficial abductor namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-70 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000686 name: superficial grey and white zone namespace: zebrafish_anatomy synonym: "superficial grey and white zones" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-71 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000687 name: superficial pretectum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-72 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000418 ! pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000688 name: olfactory support cell namespace: zebrafish_anatomy synonym: "support cells" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-73 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000047 ! peripheral olfactory organ relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0000689 name: supracommissural nucleus of V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-74 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000690 name: supraoptic commissure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-75 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000691 name: supraorbital bone namespace: zebrafish_anatomy def: "Paired dermal bones that form the anterodorsal margin of the orbit." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-76 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001410 ! orbital region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000692 name: symplectic namespace: zebrafish_anatomy def: "The symplectic is an irregularly rod-shaped cartilage replacement bone articulating with the hyomandibular and quadrate." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-77 relationship: develops_from ZFA:0001422 ! hyosymplectic cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001272 ! dorsal mandibular arch relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000693 name: tangential nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-78 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000401 ! octaval nerve sensory nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000694 name: ceratobranchial 5 tooth namespace: zebrafish_anatomy def: "The tips of the ceratobranchial5 teeth form before the ceratobranchial itself (3.0 mm NL). As they grow ventrally, they meet the perichondrally ossified surface of ceratobranchial5 and become firmly ankylosed to the bone. Ceratobranchial teeth are the only teeth present in zebrafish and other cypriniforms." [ZFIN:curator] synonym: "pharyngeal teeth" RELATED [] synonym: "teeth" RELATED [] synonym: "tooth" RELATED [] xref: ZFIN:ZDB-ANAT-011113-79 relationship: develops_from ZFA:0001153 ! tooth placode relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000056 ! pharynx relationship: part_of ZFA:0001239 ! ceratobranchial 5 relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000695 name: labial cavities namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-8 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000696 name: telencephalic ventricle namespace: zebrafish_anatomy synonym: "lateral ventricle" RELATED [] synonym: "telencephalic vesicle" RELATED [] xref: ZFIN:ZDB-ANAT-011113-80 relationship: develops_from ZFA:0001259 ! forebrain ventricle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000697 name: cranial nerve V namespace: zebrafish_anatomy synonym: "CN-V" RELATED [] synonym: "trigeminal nerve" RELATED [] xref: ZFIN:ZDB-ANAT-011113-81 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000698 name: tripus namespace: zebrafish_anatomy def: "The fourth Weberian ossicle. The tripus is a complex modification of the parapophysis and rib of the third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swimbladder. Bird and Mabee, 2003." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-82 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: part_of ZFA:0001169 ! vertebra 3 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000699 name: ural ossification namespace: zebrafish_anatomy synonym: "ural ossifications" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-83 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000700 name: utricle namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-84 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000559 ! otolith organ relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000701 name: ventral arrector namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-85 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000702 name: ventral horn spinal cord namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-86 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000703 name: ventral motor nucleus trigeminal nerve namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-87 is_a: ZFA:0001365 ! trigeminal motor nuclei relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000704 name: ventral pelvic arrector namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-88 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000705 name: ventral root namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-89 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000706 name: posterior intestine namespace: zebrafish_anatomy def: "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-9 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000707 name: ventral zone namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-90 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000392 ! median tuberal portion relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000708 name: ventrolateral optic tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-91 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000252 ! optic tract relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000709 name: vestibulo-spinal tract namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-92 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000318 ! brain stem/spinal tract and commissures relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000710 name: viscerosensory commissural nucleus of Cajal namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-93 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000711 name: DEL namespace: zebrafish_anatomy def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995." [ZFIN:curator] synonym: "deep cell layer" RELATED [ZFIN:ZDB-PUB-961014-576] synonym: "DEL cells" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-011113-94 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001473 ! deep blastomere relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0001176 ! blastoderm relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0000712 name: I-YSL namespace: zebrafish_anatomy def: "The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "internal yolk syncytial layer" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-011113-95 relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000088 ! YSL relationship: start ZFS:0000013 ! Blastula:Oblong [Term] id: ZFA:0000713 name: abducens motor nuclei namespace: zebrafish_anatomy synonym: "motor nucleus VI" RELATED [] synonym: "nVI" RELATED [] xref: ZFIN:ZDB-ANAT-011113-96 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000714 name: accessory pretectal nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-97 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000183 ! central pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000715 name: adductor hyohyoid namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-011113-98 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000521 ! hyoid muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000716 name: afferent branchial artery namespace: zebrafish_anatomy synonym: "ABA" RELATED [] xref: ZFIN:ZDB-ANAT-011113-99 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000717 name: apical ectodermal ridge median fin fold namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-1 relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000718 name: epaxial region somite 27 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-10 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000931 ! myotome somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000719 name: slow muscle cell somite 21 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 21" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-100 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000929 ! myotome somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000720 name: slow muscle cell somite 24 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 24" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-101 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000930 ! myotome somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000721 name: slow muscle cell somite 27 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 27" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-102 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000931 ! myotome somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000722 name: slow muscle cell somite 3 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 3" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-103 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000932 ! myotome somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000723 name: slow muscle cell somite 5 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 5" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-104 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000933 ! myotome somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000724 name: slow muscle cell somite 8 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 8" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-105 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000934 ! myotome somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000725 name: somite 11 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-106 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000726 name: somite 14 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-107 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000727 name: somite 17 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-108 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000728 name: somite 2 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-109 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000729 name: epaxial region somite 3 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-11 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000932 ! myotome somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000730 name: somite 23 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-110 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000731 name: somite 27 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-111 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000732 name: somite 3 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-112 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000733 name: somite 7 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-113 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000734 name: specialized centra/vertebra namespace: zebrafish_anatomy synonym: "specialized centra/vertebrae" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-114 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000735 name: hemal postzygapophyses namespace: zebrafish_anatomy def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-4 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000126 ! centrum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000736 name: apical ectodermal ridge pectoral fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-116 relationship: develops_from ZFA:0000085 ! apical ectodermal ridge pectoral fin bud relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0000737 name: cranial skeleton namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-117 is_a: ZFA:0000434 ! skeletal system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000738 name: dorsal oblique extraocular muscle namespace: zebrafish_anatomy synonym: "dorsal oblique extraocular muscles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-118 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000739 name: epaxial region somite 11 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-119 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000801 ! myotome somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000740 name: epaxial region somite 5 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-12 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000933 ! myotome somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000741 name: epaxial region somite 14 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-120 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000044 ! myotome somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000742 name: epaxial region somite 17 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-121 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001015 ! myotome somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000743 name: epaxial region somite 2 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-122 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001016 ! myotome somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000744 name: epaxial region somite 22 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-123 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001017 ! myotome somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000745 name: epaxial region somite 25 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-124 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001018 ! myotome somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000746 name: epaxial region somite 28 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-125 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001019 ! myotome somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000747 name: epaxial region somite 30 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-126 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001020 ! myotome somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000748 name: epaxial region somite 6 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-127 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001021 ! myotome somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000749 name: epaxial region somite 9 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-128 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001022 ! myotome somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000750 name: fast muscle cell somite 10 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 10" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-129 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001013 ! myotome somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000751 name: epaxial region somite 8 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-13 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000934 ! myotome somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000752 name: fast muscle cell somite 13 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 13" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-130 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001014 ! myotome somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000753 name: fast muscle cell somite 16 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 16" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-131 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000927 ! myotome somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000754 name: fast muscle cell somite 19 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 19" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-132 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000928 ! myotome somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000755 name: fast muscle cell somite 21 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 21" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-133 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000929 ! myotome somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000756 name: fast muscle cell somite 24 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 24" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-134 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000930 ! myotome somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000757 name: fast muscle cell somite 27 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 27" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-135 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000931 ! myotome somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000758 name: fast muscle cell somite 3 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 3" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-136 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000932 ! myotome somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000759 name: fast muscle cell somite 5 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 5" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-137 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000933 ! myotome somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000760 name: fast muscle cell somite 8 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 8" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-138 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000934 ! myotome somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000761 name: basal plate midbrain namespace: zebrafish_anatomy synonym: "floor plate midbrain" RELATED [] synonym: "floorplate midbrain" RELATED [] xref: ZFIN:ZDB-ANAT-020309-139 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000762 name: facio-acoustic neural crest namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-14 relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0001194 ! cranial neural crest relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000763 name: floor plate rhombomere 2 namespace: zebrafish_anatomy synonym: "floor plate r2" RELATED [] synonym: "floorplate r2" RELATED [] xref: ZFIN:ZDB-ANAT-020309-140 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: part_of ZFA:0001258 ! floor plate hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000764 name: floor plate rhombomere 5 namespace: zebrafish_anatomy synonym: "floor plate r5" RELATED [] synonym: "floorplate r5" RELATED [] xref: ZFIN:ZDB-ANAT-020309-141 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: part_of ZFA:0001258 ! floor plate hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000765 name: floor plate rhombomere 8 namespace: zebrafish_anatomy synonym: "floor plate r8" RELATED [] synonym: "floorplate r8" RELATED [] xref: ZFIN:ZDB-ANAT-020309-142 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000153 ! rhombomere 8 relationship: part_of ZFA:0001258 ! floor plate hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000766 name: granular layer valvula cerebelli namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-143 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000767 name: hypaxial region somite 11 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-144 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000801 ! myotome somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000768 name: hypaxial region somite 14 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-145 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000044 ! myotome somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000769 name: hypaxial region somite 17 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-146 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001015 ! myotome somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000770 name: hypaxial region somite 2 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-147 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001016 ! myotome somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000771 name: hypaxial region somite 22 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-148 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001017 ! myotome somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000772 name: hypaxial region somite 25 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-149 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001018 ! myotome somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000773 name: fast muscle cell somite 12 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 12" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-15 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000926 ! myotome somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000774 name: hypaxial region somite 28 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-150 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001019 ! myotome somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000775 name: hypaxial region somite 30 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-151 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001020 ! myotome somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000776 name: hypaxial region somite 6 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-152 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001021 ! myotome somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000777 name: hypaxial region somite 9 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-153 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001022 ! myotome somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000778 name: interneuron spinal cord namespace: zebrafish_anatomy synonym: "interneurons spinal cord" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-154 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000779 name: lateral forebrain bundle telencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-155 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000597 ! telencephalic tracts relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000780 name: lateral wall diencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-156 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000781 name: lateral wall rhombomere 1 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-157 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000782 name: lateral wall rhombomere 4 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-158 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000783 name: lateral wall rhombomere 7 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-159 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000949 ! rhombomere 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000784 name: fast muscle cell somite 15 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 15" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-16 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000802 ! myotome somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000785 name: lateral wall telencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-160 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000786 name: medial migration pathway mesenchyme namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-161 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000999 ! mesenchyme derived from trunk neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000787 name: mesenchyme derived from head neural crest namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-162 relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000113 ! head mesenchyme relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000788 name: mesenchyme dorsal fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-163 relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001173 ! dorsal fin relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000789 name: mesoderm pectoral fin bud namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-164 relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000141 ! pectoral fin bud relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000790 name: muscle pioneer somite 10 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 10" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-165 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001047 ! slow muscle cell somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000791 name: muscle pioneer somite 13 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 13" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-166 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001048 ! slow muscle cell somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000792 name: muscle pioneer somite 16 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 16" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-167 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001049 ! slow muscle cell somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000793 name: muscle pioneer somite 19 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 19" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-168 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001050 ! slow muscle cell somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000794 name: muscle pioneer somite 22 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 22" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-169 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000844 ! slow muscle cell somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000795 name: fast muscle cell somite 18 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 18" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-17 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000803 ! myotome somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000796 name: muscle pioneer somite 25 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 25" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-170 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000845 ! slow muscle cell somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000797 name: muscle pioneer somite 28 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 28" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-171 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000846 ! slow muscle cell somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000798 name: muscle pioneer somite 30 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 30" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-172 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000847 ! slow muscle cell somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000799 name: muscle pioneer somite 6 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 6" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-173 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000848 ! slow muscle cell somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000800 name: muscle pioneer somite 9 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 9" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-174 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000850 ! slow muscle cell somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000801 name: myotome somite 11 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-175 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000725 ! somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000802 name: myotome somite 15 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-176 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000852 ! somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000803 name: myotome somite 18 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-177 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000853 ! somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000804 name: myotome somite 20 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-178 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000156 ! somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000805 name: myotome somite 23 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-179 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000730 ! somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000806 name: fast muscle cell somite 20 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 20" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-18 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000804 ! myotome somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000807 name: myotome somite 26 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-180 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000074 ! somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000808 name: myotome somite 29 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-181 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000981 ! somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000809 name: myotome somite 4 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-182 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000857 ! somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000810 name: myotome somite 7 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-183 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000733 ! somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000811 name: neural crest diencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-184 relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000101 ! diencephalon relationship: part_of ZFA:0001194 ! cranial neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000812 name: neural crest telencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-185 relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000079 ! telencephalon relationship: part_of ZFA:0001194 ! cranial neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000813 name: neuromast infraorbital namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromasts infraorbital" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-186 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000524 ! infraorbital lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000814 name: neuromast opercular namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromasts opercular" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-187 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000424 ! opercular lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000815 name: nucleus of the medial longitudinal fasciculus medulla oblongata namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-188 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000816 name: oral epithelium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-189 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000590 ! oral region relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000817 name: fast muscle cell somite 23 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 23" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-19 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000805 ! myotome somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000818 name: vagal neural crest namespace: zebrafish_anatomy def: "Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives." [ZFIN:curator] synonym: "post-otic neural crest" RELATED [] xref: ZFIN:ZDB-ANAT-060816-2 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001024 ! trunk neural crest relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000819 name: postcommissural nucleus of V central entopeduncular nucleus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-191 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000820 name: presumptive neuron neural tube namespace: zebrafish_anatomy synonym: "presumptive neurons neural tube" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-192 relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0001135 ! neural tube relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000821 name: primary neuron hindbrain namespace: zebrafish_anatomy synonym: "primary neurons hindbrain" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-195 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000569 ! presumptive hindbrain relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000822 name: rhombomere 2 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r2" RELATED [] xref: ZFIN:ZDB-ANAT-020309-196 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001208 ! presumptive rhombomere 2 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000823 name: rhombomere 5 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r5" RELATED [] xref: ZFIN:ZDB-ANAT-020309-197 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001211 ! presumptive rhombomere 5 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000824 name: roof plate rhombomere 2 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-198 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: part_of ZFA:0001311 ! roof plate rhombomere relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000825 name: roof plate rhombomere 6 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-199 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: part_of ZFA:0001311 ! roof plate rhombomere relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000826 name: central nucleus torus semicircularis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-2 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000599 ! torus semicircularis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000827 name: fast muscle cell somite 26 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 26" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-20 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000807 ! myotome somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000828 name: roof plate rhombomere 5 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-200 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: part_of ZFA:0001311 ! roof plate rhombomere relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000829 name: sclerotome somite 11 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-201 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000725 ! somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000830 name: sclerotome somite 14 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-202 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000726 ! somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000831 name: sclerotome somite 17 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-203 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000727 ! somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000832 name: sclerotome somite 2 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-204 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000728 ! somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000833 name: sclerotome somite 22 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-205 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000978 ! somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000834 name: sclerotome somite 25 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-206 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000980 ! somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000835 name: sclerotome somite 28 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-207 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000856 ! somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000836 name: sclerotome somite 30 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-208 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000157 ! somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000837 name: sclerotome somite 6 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-209 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000982 ! somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000838 name: fast muscle cell somite 29 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 29" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-21 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000808 ! myotome somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000839 name: sclerotome somite 9 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-210 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000983 ! somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000840 name: slow muscle cell somite 11 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 11" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-211 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000801 ! myotome somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000841 name: slow muscle cell somite 14 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 14" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-212 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000044 ! myotome somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000842 name: slow muscle cell somite 17 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 17" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-213 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001015 ! myotome somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000843 name: slow muscle cell somite 2 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 2" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-214 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001016 ! myotome somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000844 name: slow muscle cell somite 22 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 22" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-215 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001017 ! myotome somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000845 name: slow muscle cell somite 25 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 25" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-216 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001018 ! myotome somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000846 name: slow muscle cell somite 28 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 28" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-217 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001019 ! myotome somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000847 name: slow muscle cell somite 30 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 30" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-218 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001020 ! myotome somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000848 name: slow muscle cell somite 6 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 6" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-219 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001021 ! myotome somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000849 name: fast muscle cell somite 4 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 4" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-22 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000809 ! myotome somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000850 name: slow muscle cell somite 9 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 9" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-220 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001022 ! myotome somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000851 name: somite 12 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-221 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000852 name: somite 15 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-222 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000853 name: somite 18 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-223 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000854 name: somite 21 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-224 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000855 name: somite 24 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-225 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000856 name: somite 28 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-226 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000857 name: somite 4 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-227 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000858 name: somite 8 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-228 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000859 name: specialized hemal arch and spine namespace: zebrafish_anatomy synonym: "ha(pu)" RELATED [] synonym: "hemal arches (preural)" RELATED [ZFIN:ZDB-PUB-011008-1] synonym: "specialized hemal arches and spines" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-229 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000860 name: fast muscle cell somite 7 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 7" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-23 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000810 ! myotome somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000861 name: ventral oblique extraocular muscle namespace: zebrafish_anatomy synonym: "ventral oblique extraocular muscles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-230 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000862 name: caudal fin skeleton namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-231 is_a: ZFA:0001123 ! median fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001058 ! caudal fin relationship: part_of ZFA:0001117 ! tail relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000863 name: dermatocranium namespace: zebrafish_anatomy def: "Cranial bones that are dermally derived." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-232 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranial skeleton relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000864 name: epaxial region somite 1 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-233 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000924 ! myotome somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000865 name: epaxial region somite 12 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-234 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000926 ! myotome somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000866 name: epaxial region somite 15 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-235 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000802 ! myotome somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000867 name: epaxial region somite 18 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-236 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000803 ! myotome somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000868 name: epaxial region somite 20 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-237 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000804 ! myotome somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000869 name: epaxial region somite 23 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-238 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000805 ! myotome somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000870 name: epaxial region somite 26 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-239 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000807 ! myotome somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000871 name: floor plate diencephalon namespace: zebrafish_anatomy synonym: "floorplate diencephalon" RELATED [] xref: ZFIN:ZDB-ANAT-020309-24 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000872 name: epaxial region somite 29 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-240 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000808 ! myotome somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000873 name: epaxial region somite 4 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-241 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000809 ! myotome somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000874 name: epaxial region somite 7 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-242 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000810 ! myotome somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000875 name: facial neural crest namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-243 relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0001194 ! cranial neural crest relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000876 name: fast muscle cell somite 11 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 11" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-244 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000801 ! myotome somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000877 name: fast muscle cell somite 14 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 14" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-245 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000044 ! myotome somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000878 name: fast muscle cell somite 17 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 17" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-246 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001015 ! myotome somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000879 name: fast muscle cell somite 2 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 2" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-247 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001016 ! myotome somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000880 name: fast muscle cell somite 22 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 22" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-248 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001017 ! myotome somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000881 name: fast muscle cell somite 25 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 25" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-249 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001018 ! myotome somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000882 name: floor plate rhombomere 1 namespace: zebrafish_anatomy synonym: "floor plate r1" RELATED [] xref: ZFIN:ZDB-ANAT-020309-25 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: part_of ZFA:0001258 ! floor plate hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000883 name: fast muscle cell somite 28 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 28" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-250 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001019 ! myotome somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000884 name: fast muscle cell somite 30 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 30" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-251 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001020 ! myotome somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000885 name: fast muscle cell somite 6 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 6" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-252 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001021 ! myotome somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000886 name: fast muscle cell somite 9 namespace: zebrafish_anatomy synonym: "fast muscle cells somite 9" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-253 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001022 ! myotome somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000887 name: floor plate neural rod namespace: zebrafish_anatomy synonym: "floorplate neural rod" RELATED [] xref: ZFIN:ZDB-ANAT-020309-254 relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0000133 ! neural rod relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000888 name: floor plate rhombomere 3 namespace: zebrafish_anatomy synonym: "floor plate r3" RELATED [] synonym: "floorplate r3" RELATED [] xref: ZFIN:ZDB-ANAT-020309-255 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: part_of ZFA:0001258 ! floor plate hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000889 name: floor plate rhombomere 6 namespace: zebrafish_anatomy synonym: "floor plate r6" RELATED [] synonym: "floorplate r6" RELATED [] xref: ZFIN:ZDB-ANAT-020309-256 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: part_of ZFA:0001258 ! floor plate hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000890 name: floor plate spinal cord namespace: zebrafish_anatomy synonym: "floorplate spinal cord" RELATED [] xref: ZFIN:ZDB-ANAT-020309-257 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000891 name: hypaxial region somite 1 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-258 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000924 ! myotome somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000892 name: hypaxial region somite 12 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-259 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000926 ! myotome somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000893 name: floor plate rhombomere 4 namespace: zebrafish_anatomy synonym: "floor plate r4" RELATED [] synonym: "floorplate r4" RELATED [] xref: ZFIN:ZDB-ANAT-020309-26 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: part_of ZFA:0001258 ! floor plate hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000894 name: hypaxial region somite 15 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-260 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000802 ! myotome somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000895 name: hypaxial region somite 18 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-261 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000803 ! myotome somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000896 name: hypaxial region somite 20 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-262 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000804 ! myotome somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000897 name: hypaxial region somite 23 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-263 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000805 ! myotome somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000898 name: hypaxial region somite 26 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-264 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000807 ! myotome somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000899 name: hypaxial region somite 29 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-265 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000808 ! myotome somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000900 name: hypaxial region somite 4 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-266 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000809 ! myotome somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000901 name: hypaxial region somite 7 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-267 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000810 ! myotome somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000902 name: hypural musculature namespace: zebrafish_anatomy synonym: "hypural muscles" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-268 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000903 name: interpeduncular nucleus tegmentum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-269 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000904 name: floor plate rhombomere 7 namespace: zebrafish_anatomy synonym: "floor plate r7" RELATED [] synonym: "floorplate r7" RELATED [] xref: ZFIN:ZDB-ANAT-020309-27 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000949 ! rhombomere 7 relationship: part_of ZFA:0001258 ! floor plate hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000905 name: lateral mesenchyme derived from mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-270 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000081 ! trunk mesenchyme relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000906 name: lateral wall midbrain namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-271 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000907 name: lateral wall rhombomere 2 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-272 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000908 name: lateral wall rhombomere 5 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-273 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000909 name: lateral wall rhombomere 8 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-274 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000153 ! rhombomere 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000910 name: medial forebrain bundle telencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-275 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000597 ! telencephalic tracts relationship: part_of ZFA:0005111 ! medial forebrain bundle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000911 name: medial pterygiophores dorsal fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-276 is_obsolete: true [Term] id: ZFA:0000912 name: mesenchyme median fin fold namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-278 relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000913 name: molecular layer valvula cerebelli namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-279 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000914 name: floor plate telencephalon namespace: zebrafish_anatomy synonym: "floorplate telencephalon" RELATED [] xref: ZFIN:ZDB-ANAT-020309-28 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000915 name: muscle pioneer somite 11 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 11" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-280 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000840 ! slow muscle cell somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000916 name: muscle pioneer somite 14 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 14" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-281 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000841 ! slow muscle cell somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000917 name: muscle pioneer somite 17 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 17" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-282 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000842 ! slow muscle cell somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000918 name: muscle pioneer somite 20 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 20" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-283 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000967 ! slow muscle cell somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000919 name: muscle pioneer somite 23 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 23" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-284 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000969 ! slow muscle cell somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000920 name: muscle pioneer somite 26 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 26" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-285 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000970 ! slow muscle cell somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000921 name: muscle pioneer somite 29 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 29" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-286 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000971 ! slow muscle cell somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000922 name: muscle pioneer somite 4 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 4" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-287 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000972 ! slow muscle cell somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000923 name: muscle pioneer somite 7 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 7" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-288 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000973 ! slow muscle cell somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000924 name: myotome somite 1 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-289 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000072 ! somite 1 relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000925 name: hypaxial region somite 10 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-29 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001013 ! myotome somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000926 name: myotome somite 12 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-290 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000851 ! somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000927 name: myotome somite 16 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-291 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000976 ! somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000928 name: myotome somite 19 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-292 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000977 ! somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000929 name: myotome somite 21 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-293 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000854 ! somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000930 name: myotome somite 24 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-294 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000855 ! somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000931 name: myotome somite 27 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-295 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000731 ! somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000932 name: myotome somite 3 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-296 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000732 ! somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000933 name: myotome somite 5 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-297 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000073 ! somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000934 name: myotome somite 8 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-298 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000858 ! somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000935 name: neural crest midbrain namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-299 relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0001194 ! cranial neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000936 name: dorsal fin distal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-3 is_a: ZFA:0001419 ! dorsal fin radial relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000937 name: hypaxial region somite 13 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-30 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001014 ! myotome somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000938 name: central canal namespace: zebrafish_anatomy synonym: "neural lumen" RELATED [] xref: ZFIN:ZDB-ANAT-020309-300 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000939 name: neuromast middle namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromasts middle" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-301 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000344 ! middle lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000940 name: neuromast posterior namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromasts posterior" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-302 is_a: ZFA:0000243 ! neuromast relationship: develops_from ZFA:0001157 ! posterior lateral line primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000944 ! posterior lateral line relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000941 name: nucleus of the medial longitudinal fasciculus synencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-303 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000942 name: paraxial mesenchyme namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-304 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000081 ! trunk mesenchyme relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000943 name: pectoral fin skeleton namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-305 is_a: ZFA:0000027 ! paired fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000944 name: posterior lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "pll" RELATED [] xref: ZFIN:ZDB-ANAT-020309-306 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001471 ! posterior lateral line system relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000946 name: hypaxial region somite 16 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-31 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000927 ! myotome somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000947 name: dorsal fin proximal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-310 is_a: ZFA:0001419 ! dorsal fin radial relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000948 name: rhombomere 3 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r3" RELATED [] xref: ZFIN:ZDB-ANAT-020309-311 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001213 ! presumptive rhombomere 3 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000949 name: rhombomere 7 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r7" RELATED [] xref: ZFIN:ZDB-ANAT-020309-312 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001209 ! presumptive rhombomere 7 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000950 name: roof plate rhombomere 3 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-313 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: part_of ZFA:0001311 ! roof plate rhombomere relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000951 name: roof plate rhombomere 7 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-314 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000949 ! rhombomere 7 relationship: part_of ZFA:0001311 ! roof plate rhombomere relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000952 name: sclerotome somite 1 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-315 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000072 ! somite 1 relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000953 name: sclerotome somite 12 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-316 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000851 ! somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000954 name: sclerotome somite 15 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-317 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000852 ! somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000955 name: sclerotome somite 18 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-318 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000853 ! somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000956 name: sclerotome somite 20 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-319 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000156 ! somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000957 name: hypaxial region somite 19 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-32 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000928 ! myotome somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000958 name: sclerotome somite 23 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-320 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000730 ! somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000959 name: sclerotome somite 26 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-321 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000074 ! somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000960 name: sclerotome somite 29 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-322 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000981 ! somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000961 name: sclerotome somite 4 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-323 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000857 ! somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000962 name: sclerotome somite 7 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-324 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000733 ! somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000963 name: slow muscle cell somite 1 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 1" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-325 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000924 ! myotome somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000964 name: slow muscle cell somite 12 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 12" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-326 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000926 ! myotome somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000965 name: slow muscle cell somite 15 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 15" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-327 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000802 ! myotome somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000966 name: slow muscle cell somite 18 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 18" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-328 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000803 ! myotome somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000967 name: slow muscle cell somite 20 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 20" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-329 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000804 ! myotome somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000968 name: hypaxial region somite 21 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-33 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000929 ! myotome somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000969 name: slow muscle cell somite 23 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 23" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-330 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000805 ! myotome somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000970 name: slow muscle cell somite 26 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 26" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-331 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000807 ! myotome somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000971 name: slow muscle cell somite 29 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 29" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-332 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000808 ! myotome somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000972 name: slow muscle cell somite 4 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 4" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-333 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000809 ! myotome somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000973 name: slow muscle cell somite 7 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 7" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-334 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000810 ! myotome somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000974 name: somite 10 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-335 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000975 name: somite 13 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-336 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000976 name: somite 16 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-337 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000977 name: somite 19 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-338 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000978 name: somite 22 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-339 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000979 name: hypaxial region somite 24 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-34 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000930 ! myotome somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000980 name: somite 25 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-340 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000981 name: somite 29 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-341 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000982 name: somite 6 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-342 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000983 name: somite 9 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-343 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000984 name: superior reticular formation tegmentum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-344 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000985 name: ventral rhombencephalic commissure medulla oblongata namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-345 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000986 name: hypaxial region somite 27 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-35 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000931 ! myotome somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000987 name: hypaxial region somite 3 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-36 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000932 ! myotome somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000988 name: hypaxial region somite 5 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-37 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000933 ! myotome somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000989 name: hypaxial region somite 8 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-38 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000934 ! myotome somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000990 name: intermediate mesenchyme namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-39 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000081 ! trunk mesenchyme relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000991 name: epaxial region somite 10 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-4 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001013 ! myotome somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000992 name: lateral migration pathway mesenchyme namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-41 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000999 ! mesenchyme derived from trunk neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000993 name: lateral wall neural rod namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-42 relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0000133 ! neural rod relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000994 name: lateral wall rhombomere 3 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-43 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000995 name: lateral wall rhombomere 6 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-44 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000996 name: lateral wall spinal cord namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-45 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000997 name: medial funicular nucleus trigeminal nuclei namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-46 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000433 ! sensory trigeminal nuclei relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000998 name: mesenchyme derived from head mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-47 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000113 ! head mesenchyme relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000999 name: mesenchyme derived from trunk neural crest namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-48 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000942 ! paraxial mesenchyme relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001000 name: mesenchyme pectoral fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-49 relationship: develops_from ZFA:0000789 ! mesoderm pectoral fin bud relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001001 name: epaxial region somite 13 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-5 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001014 ! myotome somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001002 name: motor axons peripheral namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-50 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001003 name: muscle pioneer somite 12 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 12" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-51 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000964 ! slow muscle cell somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001004 name: muscle pioneer somite 15 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 15" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-52 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000965 ! slow muscle cell somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001005 name: muscle pioneer somite 18 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 18" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-53 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000966 ! slow muscle cell somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001006 name: muscle pioneer somite 21 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 21" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-54 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000719 ! slow muscle cell somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001007 name: muscle pioneer somite 24 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 24" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-55 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000720 ! slow muscle cell somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001008 name: muscle pioneer somite 27 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 27" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-56 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000721 ! slow muscle cell somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001009 name: muscle pioneer somite 3 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 3" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-57 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000722 ! slow muscle cell somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001010 name: muscle pioneer somite 5 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 5" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-58 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000723 ! slow muscle cell somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001011 name: muscle pioneer somite 8 namespace: zebrafish_anatomy synonym: "muscle pioneers somite 8" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-59 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000724 ! slow muscle cell somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001012 name: epaxial region somite 16 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-6 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000927 ! myotome somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001013 name: myotome somite 10 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-60 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000974 ! somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001014 name: myotome somite 13 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-61 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000975 ! somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001015 name: myotome somite 17 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-62 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000727 ! somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001016 name: myotome somite 2 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-63 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000728 ! somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001017 name: myotome somite 22 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-64 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000978 ! somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001018 name: myotome somite 25 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-65 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000980 ! somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001019 name: myotome somite 28 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-66 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000856 ! somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001020 name: myotome somite 30 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-67 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000157 ! somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001021 name: myotome somite 6 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-68 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000982 ! somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001022 name: myotome somite 9 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-69 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000983 ! somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001023 name: epaxial region somite 19 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-7 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000928 ! myotome somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001024 name: trunk neural crest namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-70 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000045 ! neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001025 name: neuromast occipital namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromasts occipital" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-72 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000400 ! occipital lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0001026 name: neuromast supraorbital namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromasts supraorbital" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-73 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000443 ! supraorbital lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0001027 name: oral cavity namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-74 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000590 ! oral region relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001028 name: hypurapophysis namespace: zebrafish_anatomy def: "The paired bony lateral extensions off the hemal arch of the parhypural. Mabee and Bird, 2001." [ZFIN:curator] synonym: "hypurapophyses" RELATED PLURAL [] synonym: "parhypurapophyses" RELATED [] synonym: "parhypurapophyses processes" RELATED [] xref: ZFIN:ZDB-ANAT-020309-75 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000859 ! specialized hemal arch and spine relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001029 name: inner limiting membrane namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-061101-7 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001030 name: epaxial region somite 21 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-8 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000929 ! myotome somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001031 name: rhombomere 1 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r1" RELATED [] xref: ZFIN:ZDB-ANAT-020309-81 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001207 ! presumptive rhombomere 1 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001032 name: rhombomere 4 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r4" RELATED [] xref: ZFIN:ZDB-ANAT-020309-82 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001212 ! presumptive rhombomere 4 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001033 name: roof plate rhombomere 1 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-83 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: part_of ZFA:0001311 ! roof plate rhombomere relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001034 name: roof plate rhombomere 4 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-84 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: part_of ZFA:0001311 ! roof plate rhombomere relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001035 name: roof plate rhombomere 8 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020309-85 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000153 ! rhombomere 8 relationship: part_of ZFA:0001311 ! roof plate rhombomere relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001036 name: sclerotome somite 10 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-86 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000974 ! somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001037 name: sclerotome somite 13 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-87 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000975 ! somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001038 name: sclerotome somite 16 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-88 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000976 ! somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001039 name: sclerotome somite 19 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-89 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000977 ! somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001040 name: epaxial region somite 24 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-9 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000930 ! myotome somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001041 name: sclerotome somite 21 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-90 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000854 ! somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001042 name: sclerotome somite 24 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-91 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000855 ! somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001043 name: sclerotome somite 27 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-92 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000731 ! somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001044 name: sclerotome somite 3 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-93 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000732 ! somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001045 name: sclerotome somite 5 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-94 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000073 ! somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001046 name: sclerotome somite 8 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-020309-95 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000858 ! somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001047 name: slow muscle cell somite 10 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 10" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-96 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001013 ! myotome somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001048 name: slow muscle cell somite 13 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 13" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-97 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001014 ! myotome somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001049 name: slow muscle cell somite 16 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 16" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-98 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000927 ! myotome somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001050 name: slow muscle cell somite 19 namespace: zebrafish_anatomy synonym: "slow muscle cells somite 19" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020309-99 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000928 ! myotome somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001051 name: caudal division of the internal carotid artery namespace: zebrafish_anatomy synonym: "CaDI" RELATED [] xref: ZFIN:ZDB-ANAT-020702-1 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005081 ! internal carotid artery relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001052 name: primordial hindbrain channel namespace: zebrafish_anatomy def: "The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins. Isogai et al. (2002)" [ZFIN:curator] synonym: "medial head vein" RELATED [] synonym: "PHCB" RELATED [] xref: ZFIN:ZDB-ANAT-020702-10 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001267 ! cranial vasculature relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001053 name: primitive internal carotid artery namespace: zebrafish_anatomy synonym: "PICA" RELATED [] xref: ZFIN:ZDB-ANAT-020702-11 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001054 name: lateral dorsal aorta namespace: zebrafish_anatomy def: "Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is is called the radiax of the aorta. Isogai et al. 2001." [ZFIN:curator] synonym: "LDA" RELATED [] xref: ZFIN:ZDB-ANAT-020702-12 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001055 name: pronephric duct opening namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020702-13 relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000150 ! pronephric duct relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001056 name: myotome namespace: zebrafish_anatomy def: "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] synonym: "myomeres" RELATED [ZFIN:ZDB-PUB-961014-576] xref: ZFIN:ZDB-ANAT-020702-14 relationship: develops_from ZFA:0000155 ! somite relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! body musculature relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001057 name: intersegmental vein namespace: zebrafish_anatomy def: "Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel. Isogai et al. 2003.'" [ZFIN:curator] synonym: "ISV" RELATED [] xref: ZFIN:ZDB-ANAT-020702-15 is_a: ZFA:0000082 ! vein is_a: ZFA:0001285 ! intersegmental vessel relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0001058 name: caudal fin namespace: zebrafish_anatomy synonym: "tail fin" RELATED [] xref: ZFIN:ZDB-ANAT-020702-16 is_a: ZFA:0000108 ! fin relationship: develops_from ZFA:0001069 ! ventral fin fold relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001059 name: cranial division of the internal carotid artery namespace: zebrafish_anatomy synonym: "CrDI" RELATED [] synonym: "rostral division of the internal carotid artery" RELATED [] xref: ZFIN:ZDB-ANAT-020702-17 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0005081 ! internal carotid artery relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001060 name: basidorsal namespace: zebrafish_anatomy def: "Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus." [ZFIN:curator] synonym: "arcualia" RELATED [] xref: ZFIN:ZDB-ANAT-060331-5 relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001189 ! vertebrae relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001061 name: intersegmental artery namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020702-19 is_a: ZFA:0000005 ! artery is_a: ZFA:0001285 ! intersegmental vessel relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0001062 name: primitive mesencephalic artery namespace: zebrafish_anatomy def: "Branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundary" [ZFIN:curator] synonym: "PMsA" RELATED [] xref: ZFIN:ZDB-ANAT-020702-2 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001063 name: posterior caudal vein namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020702-20 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0005037 ! tail vasculature relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001064 name: rhombomere namespace: zebrafish_anatomy def: "A segment of the developing hindbrain. Kimmel et al, 1995." [ZFIN:curator] synonym: "hindbrain segment" RELATED [] synonym: "neuromeres" RELATED [] synonym: "rhombomeres" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-020702-3 is_a: ZFA:0001328 ! neuromere relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001065 name: lateral mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-020702-4 relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001066 name: neural arch namespace: zebrafish_anatomy def: "A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [ZFIN:curator] synonym: "dorsal arcocentrum" RELATED [] xref: ZFIN:ZDB-ANAT-060331-6 relationship: develops_from ZFA:0001060 ! basidorsal relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001189 ! vertebrae relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001067 name: anterior cerebral vein namespace: zebrafish_anatomy synonym: "ACeV" RELATED [] synonym: "rostral cerebral vein" RELATED [] xref: ZFIN:ZDB-ANAT-020702-6 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001267 ! cranial vasculature relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001068 name: mesencephalic artery namespace: zebrafish_anatomy def: "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al.2001." [ZFIN:curator] synonym: "MsA" RELATED [] xref: ZFIN:ZDB-ANAT-020702-7 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0001062 ! primitive mesencephalic artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001069 name: ventral fin fold namespace: zebrafish_anatomy synonym: "tail fin fold" RELATED [] synonym: "ventral fin" RELATED [] xref: ZFIN:ZDB-ANAT-020702-8 relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001070 name: presumptive pronephric mesoderm namespace: zebrafish_anatomy synonym: "nephron primordium" RELATED [] xref: ZFIN:ZDB-ANAT-020702-9 relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0001206 ! intermediate mesoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001071 name: presumptive retina namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-030922-1 relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000050 ! optic vesicle relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001072 name: thyroid follicle namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-030922-10 relationship: develops_from ZFA:0001081 ! thyroid primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001073 name: axial vasculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-030922-11 is_a: ZFA:0001079 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001074 name: taste bud namespace: zebrafish_anatomy synonym: "taste buds" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-030922-12 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001075 name: choroid fissure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-030922-13 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001076 name: intestinal bulb namespace: zebrafish_anatomy def: "This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005." [ZFIN:curator] synonym: "anterior intestine" RELATED [] xref: ZFIN:ZDB-ANAT-030922-14 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001077 name: thymus primordium namespace: zebrafish_anatomy def: "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. Willett et al, 1999." [ZFIN:curator] synonym: "thymic rudiment" RELATED [] xref: ZFIN:ZDB-ANAT-030922-2 relationship: develops_from ZFA:0000818 ! vagal neural crest relationship: develops_from ZFA:0001104 ! pharyngeal endoderm relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001159 ! immune system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001078 name: thymus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-030922-3 relationship: develops_from ZFA:0001077 ! thymus primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001159 ! immune system relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001079 name: vasculature namespace: zebrafish_anatomy synonym: "blood vessels" RELATED [] synonym: "circulatory system" RELATED [] xref: ZFIN:ZDB-ANAT-030922-4 is_a: ZFA:0000496 ! organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001080 name: sclerotome namespace: zebrafish_anatomy synonym: "sclerotomes" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-030922-5 relationship: develops_from ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001081 name: thyroid primordium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-030922-6 relationship: develops_from ZFA:0001104 ! pharyngeal endoderm relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001082 name: chordo neural hinge namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-030922-7 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000135 ! notochord relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001083 name: ventricular zone namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-030922-8 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001084 name: epaxial region namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-031211-12 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001056 ! myotome relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001085 name: hypaxial region namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-031211-13 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001056 ! myotome relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001086 name: muscle pioneer namespace: zebrafish_anatomy synonym: "muscle pioneers" RELATED PLURAL [] synonym: "non migratory adaxial cells" RELATED [] xref: ZFIN:ZDB-ANAT-031211-14 relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0009116 ! slow muscle cell relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001089 name: myoseptum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-031211-5 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001056 ! myotome relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001093 name: unspecified namespace: zebrafish_anatomy def: "Annotation with this anatomy term indicates that a structure was not specified by the author." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-041102-1 is_a: ZFA:0100000 ! zebrafish anatomical entity relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0001094 name: whole organism namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-1 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0001095 name: immature macula namespace: zebrafish_anatomy synonym: "immature maculae" RELATED PLURAL [] synonym: "immature sensory patch" RELATED [] synonym: "immature sensory patches" RELATED [] xref: ZFIN:ZDB-ANAT-050228-10 relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0000051 ! otic vesicle relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001096 name: immature anterior macula namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-11 relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001095 ! immature macula relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001097 name: immature posterior macula namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-12 relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001095 ! immature macula relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001098 name: immature sensory hair cell anterior macula namespace: zebrafish_anatomy synonym: "immature sensory hair cells anterior macula" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-050228-13 relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001096 ! immature anterior macula relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001099 name: immature sensory hair cell posterior macula namespace: zebrafish_anatomy synonym: "immature sensory hair cells posterior macula" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-050228-14 relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001097 ! immature posterior macula relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001100 name: hepatic duct namespace: zebrafish_anatomy def: "A duct that carries bile from the liver to the small intestine. Crump et al, 2004." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050228-20 relationship: develops_from ZFA:0001104 ! pharyngeal endoderm relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000056 ! pharynx relationship: part_of ZFA:0001306 ! pharyngeal arch relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001107 name: internal gill bud namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-21 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0001108 name: anterior commissure namespace: zebrafish_anatomy synonym: "commissura anterior" RELATED [] synonym: "commissura rostral" RELATED [] xref: ZFIN:ZDB-ANAT-050228-22 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000597 ! telencephalic tracts relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001109 name: oocyte namespace: zebrafish_anatomy synonym: "egg" RELATED [] synonym: "ovarian follicle stage V" RELATED [] xref: ZFIN:ZDB-ANAT-050228-23 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001110 name: ovarian follicle namespace: zebrafish_anatomy def: "Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg.Selman et al, 1993." [ZFIN:curator] synonym: "egg follicle" RELATED [] xref: ZFIN:ZDB-ANAT-050228-24 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000403 ! ovary relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001111 name: zona radiata namespace: zebrafish_anatomy synonym: "vitelline envelope" RELATED [] xref: ZFIN:ZDB-ANAT-050228-25 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001112 name: granulosa cell layer namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-26 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001113 name: thecal cell layer namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-27 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001114 name: head namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-28 is_a: ZFA:0001308 ! cardinal organism part relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001115 name: trunk namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-29 is_a: ZFA:0001308 ! cardinal organism part relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001116 name: presumptive structure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-3 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0001117 name: tail namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-30 is_a: ZFA:0001308 ! cardinal organism part relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001118 name: urogenital papilla namespace: zebrafish_anatomy def: "A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed. Brion et al, 2004." [ZFIN:curator] synonym: "anal papilla" RELATED [] synonym: "anal papillae" RELATED [] synonym: "genital papilla" RELATED [] synonym: "UGP" RELATED [] synonym: "urogenital papillae" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-050228-31 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000632 ! reproductive system relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001119 name: dermis namespace: zebrafish_anatomy def: "A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales. Le Guellec et al, 2004." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050228-32 relationship: develops_from ZFA:0000255 ! paraxial mesoderm relationship: develops_from ZFA:0000787 ! mesenchyme derived from head neural crest relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001120 name: neuroectoderm namespace: zebrafish_anatomy synonym: "neurectoderm" RELATED [] xref: ZFIN:ZDB-ANAT-050228-33 relationship: end ZFS:0000038 ! Larval:Day 6 relationship: part_of ZFA:0000016 ! ectoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001121 name: presumptive shield namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-34 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000018 ! Gastrula:Germ-ring relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0001122 name: primary germ layer namespace: zebrafish_anatomy synonym: "embryonic germ layers" RELATED [] xref: ZFIN:ZDB-ANAT-050228-35 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000038 ! Larval:Day 6 relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001123 name: median fin skeleton namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-36 is_a: ZFA:0000434 ! skeletal system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! axial skeleton relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001124 name: dorsal fin skeleton namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-37 is_a: ZFA:0001123 ! median fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001173 ! dorsal fin relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001125 name: organizer inducing center namespace: zebrafish_anatomy def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999." [ZFIN:curator] synonym: "Nieuwkoop center" RELATED [] xref: ZFIN:ZDB-ANAT-050228-38 relationship: end ZFS:0000019 ! Gastrula:Shield relationship: part_of ZFA:0000088 ! YSL relationship: start ZFS:0000012 ! Blastula:High [Term] id: ZFA:0001126 name: noninvoluting endocytic marginal cell cluster namespace: zebrafish_anatomy def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. Cooper et al, 1996." [ZFIN:curator] synonym: "NEM" RELATED [] synonym: "noninvoluting endocytic marginal cells" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-050228-39 relationship: end ZFS:0000017 ! Gastrula:50%-epiboly relationship: part_of ZFA:0000038 ! margin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001127 name: visual system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-4 is_a: ZFA:0000282 ! sensory system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001128 name: pharyngeal pouch 1 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-40 is_a: ZFA:0001106 ! pharyngeal pouch relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001129 name: pharyngeal pouches 2-6 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-41 is_a: ZFA:0001106 ! pharyngeal pouch relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001130 name: pharyngeal pouch 2 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-42 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001131 name: pharyngeal pouch 3 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-43 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001132 name: pharyngeal pouch 6 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-44 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001133 name: pharyngeal pouch 5 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-45 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001134 name: pharyngeal pouch 4 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-46 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001135 name: neural tube namespace: zebrafish_anatomy synonym: "presumptive central nervous system" RELATED [] xref: ZFIN:ZDB-ANAT-050228-47 relationship: develops_from ZFA:0000133 ! neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001120 ! neuroectoderm relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001136 name: hypodermis namespace: zebrafish_anatomy def: "A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells. Le Guellec et al, 2004." [ZFIN:curator] synonym: "subcutis" RELATED [] xref: ZFIN:ZDB-ANAT-050228-48 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001137 name: ventral tooth namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-49 is_a: ZFA:0000694 ! ceratobranchial 5 tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001138 name: vestibuloauditory system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-5 is_a: ZFA:0000282 ! sensory system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001139 name: mediodorsal tooth namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-50 is_a: ZFA:0000694 ! ceratobranchial 5 tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001140 name: dorsal tooth namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-51 is_a: ZFA:0000694 ! ceratobranchial 5 tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001141 name: tooth 1V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-52 is_a: ZFA:0001137 ! ventral tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001142 name: tooth 5V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-53 is_a: ZFA:0001137 ! ventral tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001143 name: tooth 4V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-54 is_a: ZFA:0001137 ! ventral tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001144 name: tooth 2V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-55 is_a: ZFA:0001137 ! ventral tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001145 name: tooth 3V namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-56 is_a: ZFA:0001137 ! ventral tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001146 name: tooth 1MD namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-57 is_a: ZFA:0001139 ! mediodorsal tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001147 name: tooth 2MD namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-58 is_a: ZFA:0001139 ! mediodorsal tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001148 name: tooth 1D namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-59 is_a: ZFA:0001140 ! dorsal tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001149 name: olfactory system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-6 is_a: ZFA:0000282 ! sensory system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001150 name: tooth 2D namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-60 is_a: ZFA:0001140 ! dorsal tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001151 name: tooth 4MD namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-61 is_a: ZFA:0001139 ! mediodorsal tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001152 name: tooth 3MD namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-62 is_a: ZFA:0001139 ! mediodorsal tooth relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001153 name: tooth placode namespace: zebrafish_anatomy synonym: "dental primordium" RELATED [] synonym: "tooth germ" RELATED [] xref: ZFIN:ZDB-ANAT-050228-63 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001154 name: anal fin musculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-64 is_a: ZFA:0000207 ! fin musculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001162 ! anal fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001155 name: enteric nervous system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-65 relationship: develops_from ZFA:0001334 ! presumptive enteric nervous system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001156 name: posterior lateral line placode namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-66 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0001471 ! posterior lateral line system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001157 name: posterior lateral line primordium namespace: zebrafish_anatomy def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. Gompel et al, 2001." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050228-67 is_a: ZFA:0000228 ! lateral line primordium relationship: develops_from ZFA:0001156 ! posterior lateral line placode relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001471 ! posterior lateral line system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001158 name: endocrine system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-7 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001159 name: immune system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-8 is_a: ZFA:0001439 ! organ system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001160 name: adult namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050228-9 is_obsolete: true [Term] id: ZFA:0001161 name: pectoral fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050304-1 is_a: ZFA:0000108 ! fin relationship: develops_from ZFA:0000141 ! pectoral fin bud relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001162 name: anal fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-1 is_a: ZFA:0000108 ! fin relationship: develops_from ZFA:0001069 ! ventral fin fold relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001163 name: supraneural 7 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-10 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001164 name: supraneural 6 namespace: zebrafish_anatomy synonym: "sn6" RELATED [] xref: ZFIN:ZDB-ANAT-050420-11 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001165 name: supraneural 5 namespace: zebrafish_anatomy synonym: "sn5" RELATED [] xref: ZFIN:ZDB-ANAT-050420-12 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001166 name: supraneural 9 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-13 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001167 name: vertebra 1 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-14 is_a: ZFA:0001190 ! Weberian vertebrae relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001168 name: vertebra 2 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-15 is_a: ZFA:0001190 ! Weberian vertebrae relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001169 name: vertebra 3 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-16 is_a: ZFA:0001190 ! Weberian vertebrae relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001170 name: vertebra 4 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-17 is_a: ZFA:0001190 ! Weberian vertebrae relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001171 name: os suspensorium namespace: zebrafish_anatomy def: "Separate ossification from the parapophysis of the fourth vertebra; develops ventrally to curve around the anterior head of the swim bladder. Often termed a fifth Weberian ossicle. Bird and Mabee, 2003." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050420-18 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: part_of ZFA:0001170 ! vertebra 4 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001172 name: roofing cartilage namespace: zebrafish_anatomy def: "Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Bird and Mabee, 2003." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050420-19 is_a: ZFA:0001457 ! axial cartilage relationship: end ZFS:0000041 ! Larval:Days 21-29 relationship: part_of ZFA:0001191 ! supraneural 2 relationship: part_of ZFA:0001192 ! supraneural 3 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001173 name: dorsal fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-2 is_a: ZFA:0000108 ! fin relationship: develops_from ZFA:0000102 ! dorsal fin fold relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001174 name: pharyngeal epithelium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-20 relationship: develops_from ZFA:0001104 ! pharyngeal endoderm relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001175 name: blastodisc namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-21 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000015 ! Blastula:Dome relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0001176 name: blastoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-22 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001175 ! blastodisc relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0001177 name: roof plate spinal cord namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-23 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001178 name: non neural ectoderm namespace: zebrafish_anatomy synonym: "ventral ectoderm" RELATED [] xref: ZFIN:ZDB-ANAT-050420-24 relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0000016 ! ectoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001179 name: epidermal superficial stratum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-25 relationship: develops_from ZFA:0001185 ! periderm relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000105 ! epidermis relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001180 name: epidermal basal stratum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-26 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000105 ! epidermis relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001181 name: epidermal intermediate stratum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-27 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000105 ! epidermis relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001182 name: dermal deep region namespace: zebrafish_anatomy def: "Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network. Le Guellec et al, 2004." [ZFIN:curator] synonym: "stratum compactum" RELATED [] xref: ZFIN:ZDB-ANAT-050420-28 relationship: develops_from ZFA:0001186 ! collagenous dermal stroma relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001119 ! dermis relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001183 name: dermal superficial region namespace: zebrafish_anatomy synonym: "stratum laxum" RELATED [] xref: ZFIN:ZDB-ANAT-050420-29 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001119 ! dermis relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001184 name: pelvic fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-3 is_a: ZFA:0000108 ! fin relationship: develops_from ZFA:0001384 ! pelvic fin bud relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001185 name: periderm namespace: zebrafish_anatomy def: "The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL. Le Guellec et al, 2004." [ZFIN:curator] synonym: "EVL" RELATED [] xref: ZFIN:ZDB-ANAT-050420-30 relationship: develops_from ZFA:0000086 ! EVL relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000016 ! ectoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001186 name: collagenous dermal stroma namespace: zebrafish_anatomy def: "A layer of collagen fibrils present in the imature integument in an acellular subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region. Le Guellec et al, 2004." [ZFIN:curator] synonym: "primary dermal stroma" RELATED [] xref: ZFIN:ZDB-ANAT-050420-31 relationship: end ZFS:0000041 ! Larval:Days 21-29 relationship: part_of ZFA:0001119 ! dermis relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001187 name: presumptive midbrain hindbrain boundary namespace: zebrafish_anatomy synonym: "MHB" RELATED [] xref: ZFIN:ZDB-ANAT-050420-32 relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000146 ! presumptive brain relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001188 name: Weberian apparatus namespace: zebrafish_anatomy def: "The Weberian apparatus consists of the modified anteriormost four vertebrae and associated structures of otophysans which transduce sound or pressure waves from the tunica externa of the swimbladder to the inner ear (Alexander, 1962)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050420-4 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! axial skeleton relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001189 name: vertebrae namespace: zebrafish_anatomy def: "All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050420-5 is_a: ZFA:0000015 ! anatomical set relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! axial skeleton relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001190 name: Weberian vertebrae namespace: zebrafish_anatomy def: "The first four vertebrae, which are part of the Weberian apparatus." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050420-6 is_a: ZFA:0001189 ! vertebrae relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001188 ! Weberian apparatus relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001191 name: supraneural 2 namespace: zebrafish_anatomy def: "Supraneural 2 is an ovoid cartilage or cartilage replacement bone located above centrum 2. It forms an immovable joint with supraneural 3 and contributes to the neural complex roofing the neural canal." [ZFIN:curator] synonym: "sn2" RELATED [] xref: ZFIN:ZDB-ANAT-050420-7 is_a: ZFA:0001398 ! Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001363 ! neural complex relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001192 name: supraneural 3 namespace: zebrafish_anatomy def: "Supraneural 3 is an elongated cartilage or cartilage replacement bone above vertebrae 3 and 4, developmentally fusing with NA 3 and 4. A crest or blade of membrane bone forms from its dorsal surface." [ZFIN:curator] synonym: "sn3" RELATED [] xref: ZFIN:ZDB-ANAT-050420-8 is_a: ZFA:0001398 ! Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001363 ! neural complex relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001193 name: supraneural 8 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050420-9 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001194 name: cranial neural crest namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-1 relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000045 ! neural crest relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001195 name: pars anterior namespace: zebrafish_anatomy synonym: "pars distalis" RELATED [] xref: ZFIN:ZDB-ANAT-050711-10 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001282 ! adenohypophysis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001196 name: pars tuberalis namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-11 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001282 ! adenohypophysis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001197 name: pars intermedia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-12 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001282 ! adenohypophysis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001198 name: adenohypophyseal placode namespace: zebrafish_anatomy synonym: "pituitary placode" RELATED [] xref: ZFIN:ZDB-ANAT-050711-13 relationship: develops_from ZFA:0001178 ! non neural ectoderm relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001199 name: infundibulum namespace: zebrafish_anatomy def: "A short stalk connecting the pituitary with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis." [ZFIN:curator] synonym: "hypophysial stalk" RELATED [] synonym: "infundibulum of hypothalamus" RELATED [] synonym: "pituitary stalk" RELATED [] xref: ZFIN:ZDB-ANAT-050711-14 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001200 name: corpuscles of Stannius namespace: zebrafish_anatomy def: "Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-15 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001201 name: ventral lateral mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-16 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000083 ! ventral mesoderm relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0001202 name: optic cup namespace: zebrafish_anatomy synonym: "eye cup" RELATED [] xref: ZFIN:ZDB-ANAT-050711-17 relationship: develops_from ZFA:0000050 ! optic vesicle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001203 name: ciliary body namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-18 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001202 ! optic cup relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001204 name: axial mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-19 relationship: develops_from ZFA:0001378 ! axial hypoblast relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001205 name: Meckel's cartilage namespace: zebrafish_anatomy def: "Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-2 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001206 name: intermediate mesoderm namespace: zebrafish_anatomy synonym: "IM" RELATED [] xref: ZFIN:ZDB-ANAT-050711-20 relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001207 name: presumptive rhombomere 1 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-21 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000569 ! presumptive hindbrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001208 name: presumptive rhombomere 2 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-22 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000569 ! presumptive hindbrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001209 name: presumptive rhombomere 7 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-23 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000569 ! presumptive hindbrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001210 name: presumptive rhombomere 6 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-24 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000569 ! presumptive hindbrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001211 name: presumptive rhombomere 5 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-25 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000569 ! presumptive hindbrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001212 name: presumptive rhombomere 4 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-26 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000569 ! presumptive hindbrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001213 name: presumptive rhombomere 3 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-27 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000569 ! presumptive hindbrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001214 name: presumptive rhombomere 8 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-28 relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000569 ! presumptive hindbrain relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001215 name: thalamus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-29 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001216 name: pharyngeal arch skeleton namespace: zebrafish_anatomy def: "Regional skeletal system of the jaws, hyoid and branchial arches." [ZFIN:curator] synonym: "pharyngeal skeleton" RELATED [] synonym: "splanchnocranium" RELATED [] xref: ZFIN:ZDB-ANAT-050711-3 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranial skeleton relationship: part_of ZFA:0001306 ! pharyngeal arch relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001217 name: presumptive hypochord namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-30 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001218 name: presumptive floor plate namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-31 relationship: end ZFS:0000023 ! Segmentation:1-4 somites relationship: part_of ZFA:0000061 ! presumptive central nervous system relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001219 name: presumptive notochord namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-32 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001220 name: copulae namespace: zebrafish_anatomy def: "Median cartilaginous elements that are the precursors of the basibranchials. They are not assigned to specific branchial arch numbers." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-33 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001221 name: copula 1 namespace: zebrafish_anatomy def: "A long slender cartilage extending along the midline from the posterior tip of the basihyal to between the third hypobranchials." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-34 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001220 ! copulae relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001222 name: copula 2 namespace: zebrafish_anatomy def: "A cartilage extending from the posterior tip of copula 1 to the anterior tips of the fifth ceratobranchials." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-35 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001220 ! copulae relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001223 name: basibranchial 1 namespace: zebrafish_anatomy def: "Basibranchial 1 ossifies posterior to the basihyal and anterior to the first hypobranchials in copula 1 (7.6 mm) ." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-36 is_a: ZFA:0000170 ! basibranchial relationship: develops_from ZFA:0001221 ! copula 1 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001224 name: basibranchial 2 namespace: zebrafish_anatomy def: "Basibranchial 2 ossifies in copula 1 posterior to the first hypobranchials and anterior to the second hypobranchials (6.8 mm). It is the first of the three basibranchials to ossify." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-37 is_a: ZFA:0000170 ! basibranchial relationship: develops_from ZFA:0001221 ! copula 1 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001225 name: basibranchial 3 namespace: zebrafish_anatomy def: "Basibranchial 3 ossifies in copula 1 posterior to the second hypobranchials and anterior to the third hypobranchials (7.6 mm). Cartilage pads, remnants of copula 1, remain between adjacent basibranchials in the adult." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-38 is_a: ZFA:0000170 ! basibranchial relationship: develops_from ZFA:0001221 ! copula 1 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001226 name: basibranchial 4 namespace: zebrafish_anatomy def: "Occasionally, a fourth basibranchial ossifies in the narrow copula 2 cartilage, which lies posterior to the third basibranchial and anterior to the anteromedial articulation of the fifth ceratobranchials." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-39 is_a: ZFA:0000170 ! basibranchial relationship: develops_from ZFA:0001222 ! copula 2 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001227 name: pharyngeal arch 1 skeleton namespace: zebrafish_anatomy def: "Skeletal and cartilagenous elements of the first pharyngeal arch." [ZFIN:curator] synonym: "jaw cartilage" RELATED [] synonym: "jaws" RELATED [] synonym: "mandibular arch" RELATED [] synonym: "oral jaw skeleton" RELATED [] synonym: "visceral arch 1" RELATED [] xref: ZFIN:ZDB-ANAT-050711-4 is_a: ZFA:0001216 ! pharyngeal arch skeleton relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001228 name: pharyngeal arch 3 skeleton namespace: zebrafish_anatomy synonym: "branchial arch 1" RELATED [] synonym: "gill arch 1" RELATED [] synonym: "visceral arch 3" RELATED [] xref: ZFIN:ZDB-ANAT-050711-40 is_a: ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001229 name: pharyngeal arch 7 skeleton namespace: zebrafish_anatomy synonym: "branchial arch 5" RELATED [] synonym: "gill arch 5" RELATED [] synonym: "visceral arch 7" RELATED [] xref: ZFIN:ZDB-ANAT-050711-41 is_a: ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001230 name: pharyngeal arch 6 skeleton namespace: zebrafish_anatomy synonym: "branchial arch 4" RELATED [] synonym: "gill arch 4" RELATED [] synonym: "visceral arch 6" RELATED [] xref: ZFIN:ZDB-ANAT-050711-42 is_a: ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001231 name: pharyngeal arch 4 skeleton namespace: zebrafish_anatomy synonym: "branchial arch 2" RELATED [] synonym: "gill arch 2" RELATED [] synonym: "visceral arch 4" RELATED [] xref: ZFIN:ZDB-ANAT-050711-43 is_a: ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001232 name: pharyngeal arch 5 skeleton namespace: zebrafish_anatomy synonym: "branchial arch 3" RELATED [] synonym: "gill arch 3" RELATED [] synonym: "visceral arch 5" RELATED [] xref: ZFIN:ZDB-ANAT-050711-44 is_a: ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001233 name: hypobranchial 1 namespace: zebrafish_anatomy def: "Hypobranchial ossifications 1-3 develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. The first and second hypobranchials are small and irregular in shape; one or both ossifications are absent in some adults." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-45 is_a: ZFA:0000363 ! hypobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001234 name: hypobranchial 4 namespace: zebrafish_anatomy def: "Tiny hypobranchial4 cartilages appear at anteromedial tips of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorbtion or fusion to the cartilaginous anterior tip of ceratobranchial." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-46 is_a: ZFA:0000363 ! hypobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001235 name: hypobranchial 3 namespace: zebrafish_anatomy def: "Hypobranchial ossifications 1-3 develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. The first and second hypobranchials are small and irregular in shape; one or both ossifications are absent in some adults." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-47 is_a: ZFA:0000363 ! hypobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001236 name: hypobranchial 2 namespace: zebrafish_anatomy def: "Hypobranchial ossifications 1-3 develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. The first and second hypobranchials are small and irregular in shape; one or both ossifications are absent in some adults." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-48 is_a: ZFA:0000363 ! hypobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001237 name: ceratobranchial 1 namespace: zebrafish_anatomy def: "Anteromedially ceratobranchials 1-3 articulate with hypobranchials 1-3; medially they articulate with the cartilage between the basibranchials. Posterolaterally ceratobranchials 1-4 articulate with epibranchials 1-4. Gill rakers are present on the anterior and posterior margins of ceratobranchials 1-4." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-49 is_a: ZFA:0000488 ! ceratobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001238 name: iris namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-5 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001202 ! optic cup relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001239 name: ceratobranchial 5 namespace: zebrafish_anatomy def: "Ceratobranchial 5 ossifies before ceratobranchials 1-4. In the adult, ceratobranchial 5 is heavily ossified and crescent-shaped with two to three rows of posteromedially directed teeth. The anteroventral tips of ceratobranchials 5 meet medially and are ligamentously joined." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-50 is_a: ZFA:0000488 ! ceratobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001240 name: ceratobranchial 4 namespace: zebrafish_anatomy def: "Ceratobranchial 4 articulates with copula 2 medially. Posterolaterally ceratobranchials 1-4 articulate with epibranchials 1-4. Gill rakers are present on the anterior and posterior margins of ceratobranchials 1-4" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-51 is_a: ZFA:0000488 ! ceratobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001241 name: ceratobranchial 3 namespace: zebrafish_anatomy def: "Anteromedially ceratobranchials 1-3 articulate with hypobranchials 1-3; medially they articulate with the cartilage between the basibranchials. Posterolaterally ceratobranchials 1-4 articulate with epibranchials 1-4. Gill rakers are present on the anterior and posterior margins of ceratobranchials 1-4" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-52 is_a: ZFA:0000488 ! ceratobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001242 name: ceratobranchial 2 namespace: zebrafish_anatomy def: "Anteromedially ceratobranchials 1-3 articulate with hypobranchials 1-3; medially they articulate with the cartilage between the basibranchials. Posterolaterally ceratobranchials 1-4 articulate with epibranchials 1-4. Gill rakers are present on the anterior and posterior margins of ceratobranchials 1-4" [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-53 is_a: ZFA:0000488 ! ceratobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001243 name: epibranchial 1 namespace: zebrafish_anatomy def: "The narrowed medial end of epibranchial 1 articulates through cartilage with pharyngobranchial 1." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-54 is_a: ZFA:0000658 ! epibranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001244 name: epibranchial 5 namespace: zebrafish_anatomy def: "Epibranchial 5 appears as a separate center of chondrification (6.2 mm) posterior to the lateral tip of epibranchial 4 and immediately anterior to the upper end of ceratobranchial 5. In the adult, epibranchial 5 persists as a small, cartilaginous rod extending from the cartilaginous junction of the posterodorsal tip of the uncinate process of epibranchial 4 and tip of ceratobranchial5, to the cartilaginous junction of ceratobranchial 4 and epibranchial4." [ZFIN:curator] synonym: "interbranchial IV" RELATED [] xref: ZFIN:ZDB-ANAT-050711-55 is_a: ZFA:0000658 ! epibranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001245 name: epibranchial 4 namespace: zebrafish_anatomy def: "The narrow end of epibranchial4 is slightly flared, and it articulates with cartilaginous pharyngobranchial4." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-56 is_a: ZFA:0000658 ! epibranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001246 name: epibranchial 2 namespace: zebrafish_anatomy def: "The flared medial end of epibranchial 2 articulates with bifurcate lateral projections from pharyngobranchial 1." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-57 is_a: ZFA:0000658 ! epibranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001247 name: epibranchial 3 namespace: zebrafish_anatomy def: "The flared medial end of epibranchial3 articulates with the posterolateral edge of pharyngobranchial2 + 3." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-58 is_a: ZFA:0000658 ! epibranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001248 name: pharyngobranchial 1 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-59 is_obsolete: true [Term] id: ZFA:0001249 name: exocrine pancreas namespace: zebrafish_anatomy def: "The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-6 relationship: develops_from ZFA:0001369 ! anterior pancreatic bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000140 ! pancreas relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001250 name: pharyngobranchial 2 namespace: zebrafish_anatomy def: "Pharyngobranchial 2 (misidentified as pharyngobranchial 1 in Cubbage and Mabee, 1993 and Mayden 1989) is present and separate from pharyngobranchial 3. It (8.0 mm) ossifies after pharyngobranchial 3. In the adult, the cartilaginous anterior end of the ossified pharyngobranchial 2 articulates with the cartilaginous medial tip of epibranchial 1. It articulates anterolaterally and posterolaterally with the anterior and posterior cartilaginous tips of epibranchial2. In Cyprinidae pb3 overlaps pb2 (Siebert, 1987; Cavender & Coburn, 1992) but does not fuse to it." [ZFIN:curator] synonym: "infrapharyngobranchial 2" RELATED [] xref: ZFIN:ZDB-ANAT-050711-60 is_a: ZFA:0000527 ! pharyngobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001251 name: pharyngobranchial 4 namespace: zebrafish_anatomy synonym: "infrapharyngobranchials" RELATED [] xref: ZFIN:ZDB-ANAT-050711-61 is_a: ZFA:0000527 ! pharyngobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001252 name: pharyngobranchial 3 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-62 is_a: ZFA:0000527 ! pharyngobranchial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001253 name: pharyngobranchial 2+3 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-63 is_obsolete: true [Term] id: ZFA:0001254 name: cranial motoneurons namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-64 is_obsolete: true [Term] id: ZFA:0001256 name: lateral floor plate namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-66 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000022 ! floor plate relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001257 name: medial floor plate namespace: zebrafish_anatomy def: "The medial portion of the spinal cord floor plate, located adjacent to the notochord." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-67 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000022 ! floor plate relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001258 name: floor plate hindbrain namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-68 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001259 name: forebrain ventricle namespace: zebrafish_anatomy synonym: "forebrain vesicle" RELATED [] synonym: "prosencephalic ventricle" RELATED [] xref: ZFIN:ZDB-ANAT-050711-69 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000109 ! forebrain relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001260 name: endocrine pancreas namespace: zebrafish_anatomy def: "The zebrafish endocrine pancreas is composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin." [ZFIN:curator] synonym: "pancreatic islet" RELATED [] xref: ZFIN:ZDB-ANAT-050711-7 relationship: develops_from ZFA:0001370 ! posterior pancreatic bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000140 ! pancreas relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001261 name: ventricular system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-70 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001262 name: gonad primordium namespace: zebrafish_anatomy def: "Immature reproductive tissue that has not undergone final maturation into either testis or ovary." [ZFIN:curator] synonym: "gonadal primordium" RELATED [] synonym: "undifferentiated gonad" RELATED [] xref: ZFIN:ZDB-ANAT-050711-71 relationship: end ZFS:0000041 ! Larval:Days 21-29 relationship: part_of ZFA:0000632 ! reproductive system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001263 name: ovarian follicle stage I namespace: zebrafish_anatomy def: "Stage I follicles (less than 140 microns) are primary growth stage. Selman et al, 1993." [ZFIN:curator] synonym: "previtillogenic ovarian follicle" RELATED [] xref: ZFIN:ZDB-ANAT-050711-72 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001264 name: ovarian follicle stage IV namespace: zebrafish_anatomy def: "Stage IV (690-730 microns) are oocyte maturation. Selman et al, 1993." [ZFIN:curator] synonym: "mature ovarian follicle" RELATED [] xref: ZFIN:ZDB-ANAT-050711-73 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001265 name: ovarian follicle stage II namespace: zebrafish_anatomy def: "Stage II follicles (140-340 microns) are cortical alveolus stage. Selman et al, 1993." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-74 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001266 name: ovarian follicle stage III namespace: zebrafish_anatomy def: "Stage III (340-690 microns) are vitellogenesis. Selman et al, 1993." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-75 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001267 name: cranial vasculature namespace: zebrafish_anatomy synonym: "head vasculature" RELATED [] xref: ZFIN:ZDB-ANAT-050711-76 is_a: ZFA:0001079 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001268 name: sperm duct namespace: zebrafish_anatomy synonym: "sperm ducts" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-050711-77 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000598 ! testis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001269 name: regenerating fin namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-78 is_a: ZFA:0000108 ! fin relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001270 name: blastema namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-79 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001269 ! regenerating fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001271 name: neurohypophysis namespace: zebrafish_anatomy synonym: "posterior pituitary" RELATED [] xref: ZFIN:ZDB-ANAT-050711-8 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000118 ! hypophysis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001272 name: dorsal mandibular arch namespace: zebrafish_anatomy def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [ZFIN:curator] synonym: "dorsal visceral arch 2" RELATED [] synonym: "palatoquadrate arch" RELATED [] synonym: "upper jaw" RELATED [] synonym: "upper pharyngeal jaws" RELATED [] xref: ZFIN:ZDB-ANAT-050711-80 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000590 ! oral region relationship: part_of ZFA:0001227 ! pharyngeal arch 1 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001273 name: ventral mandibular arch namespace: zebrafish_anatomy def: "The ventral portion of the first pharyngeal arch, comprising the lower jaw." [ZFIN:curator] synonym: "lower jaw" RELATED [] synonym: "mandible" RELATED [] xref: ZFIN:ZDB-ANAT-050711-81 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000590 ! oral region relationship: part_of ZFA:0001227 ! pharyngeal arch 1 skeleton relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001274 name: coronomeckelian namespace: zebrafish_anatomy def: "The coronomeckelian is a membrane bone that ossifies on Meckel's cartilage where the tendon from the adductor mandibulae A3 inserts (6.1mm). In the adult, the coronomeckelian is a small, irregularly shaped bone that is fused to the dorsomedial surface of the anguloarticular, just dorsal to Meckel's cartilage." [ZFIN:curator] synonym: "sesamoid articular" RELATED [] xref: ZFIN:ZDB-ANAT-050711-82 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001275 name: mentomeckelian namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050711-83 is_obsolete: true [Term] id: ZFA:0001276 name: pharyngeal arch 2 skeleton namespace: zebrafish_anatomy synonym: "hyoid arch" RELATED [] synonym: "hyoid bars" RELATED [] synonym: "ventral visceral arch 2" RELATED [] synonym: "visceral arch 2" RELATED [] xref: ZFIN:ZDB-ANAT-050711-84 is_a: ZFA:0001216 ! pharyngeal arch skeleton relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001277 name: anterior chamber swim bladder namespace: zebrafish_anatomy def: "The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060816-3 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000076 ! swim bladder relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001278 name: posterior chamber swim bladder namespace: zebrafish_anatomy def: "The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060816-4 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000076 ! swim bladder relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001279 name: branchiostegal ray 1 namespace: zebrafish_anatomy def: "Branchiostegal ray 1 is the most anterior ray which ossifies last (5.5 mm NL)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-87 is_a: ZFA:0000476 ! branchiostegal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001280 name: branchiostegal ray 3 namespace: zebrafish_anatomy def: "Branchiostegal ray 3 is the most posterior ray which ossifies first (3.4 mm NL)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-88 is_a: ZFA:0000476 ! branchiostegal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001281 name: branchiostegal ray 2 namespace: zebrafish_anatomy def: "Branchiostegal ray 2 is between rays 1 and 3 and ossifies second." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050711-89 is_a: ZFA:0000476 ! branchiostegal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001282 name: adenohypophysis namespace: zebrafish_anatomy def: "The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mamalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish. Herzog et al, 2004." [ZFIN:curator] synonym: "anterior pituitary" RELATED [] xref: ZFIN:ZDB-ANAT-050711-9 relationship: develops_from ZFA:0001198 ! adenohypophyseal placode relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000118 ! hypophysis relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001283 name: pupil namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-88 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001284 name: optic fissure namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-89 relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001202 ! optic cup relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001285 name: intersegmental vessel namespace: zebrafish_anatomy synonym: "intersegmental vessels" RELATED PLURAL [] synonym: "intersomitic vessels" RELATED [] synonym: "Se" RELATED [] xref: ZFIN:ZDB-ANAT-050915-90 relationship: develops_from ZFA:0000014 ! dorsal aorta relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005024 ! trunk vasculature relationship: part_of ZFA:0005037 ! tail vasculature relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001286 name: caudal vein plexus namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-91 is_a: ZFA:0005037 ! tail vasculature relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001287 name: renal tubule namespace: zebrafish_anatomy synonym: "renal tubules" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-050915-92 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001288 name: renal glomeruli namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-93 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001289 name: ciliary marginal zone namespace: zebrafish_anatomy def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005." [ZFIN:curator] synonym: "circumferential germinal zone" RELATED [] synonym: "CMZ" RELATED [] xref: ZFIN:ZDB-ANAT-050915-94 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000152 ! retina relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001290 name: stomodeum namespace: zebrafish_anatomy def: "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050915-95 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0001291 name: facial ganglion namespace: zebrafish_anatomy synonym: "geniculate ganglion" RELATED [] synonym: "gVII" RELATED [] xref: ZFIN:ZDB-ANAT-050915-96 is_a: ZFA:0000013 ! cranial ganglia relationship: develops_from ZFA:0001295 ! facial placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001292 name: epiphyseal stalk namespace: zebrafish_anatomy def: "The stalk emanates from the diencephalic roof at a left-of-medial position." [ZFIN:curator] synonym: "pineal stalk" RELATED [] xref: ZFIN:ZDB-ANAT-050915-97 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001359 ! pineal complex relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0001293 name: posterior kidney namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-98 relationship: develops_from ZFA:0000151 ! pronephros relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001294 name: epibranchial placode namespace: zebrafish_anatomy synonym: "epibranchial placodes" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-050915-99 is_a: ZFA:0001309 ! neurogenic placode relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001295 name: facial placode namespace: zebrafish_anatomy synonym: "geniculate placode" RELATED [] xref: ZFIN:ZDB-ANAT-050915-100 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001296 name: glossopharyngeal placode namespace: zebrafish_anatomy synonym: "petrosal placode" RELATED [] xref: ZFIN:ZDB-ANAT-050915-101 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001297 name: vagal placode 1 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-102 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001298 name: vagal placode 2 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-103 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001299 name: vagal placode 3 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-104 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001300 name: vagal placode 4 namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-105 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001301 name: glossopharyngeal ganglion namespace: zebrafish_anatomy synonym: "gIX" RELATED [] synonym: "petrosal ganglion" RELATED [] xref: ZFIN:ZDB-ANAT-050915-106 is_a: ZFA:0000013 ! cranial ganglia relationship: develops_from ZFA:0001296 ! glossopharyngeal placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001302 name: vagal ganglion 1 namespace: zebrafish_anatomy synonym: "gX1" RELATED [] synonym: "nodose ganglion 1" RELATED [] xref: ZFIN:ZDB-ANAT-050915-107 is_a: ZFA:0000013 ! cranial ganglia relationship: develops_from ZFA:0001297 ! vagal placode 1 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001303 name: vagal ganglion 2 namespace: zebrafish_anatomy synonym: "gX2" RELATED [] synonym: "nodose ganglion 2" RELATED [] xref: ZFIN:ZDB-ANAT-050915-108 is_a: ZFA:0000013 ! cranial ganglia relationship: develops_from ZFA:0001298 ! vagal placode 2 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001304 name: vagal ganglion 3 namespace: zebrafish_anatomy synonym: "gX3" RELATED [] synonym: "nodose ganglion 3" RELATED [] xref: ZFIN:ZDB-ANAT-050915-109 is_a: ZFA:0000013 ! cranial ganglia relationship: develops_from ZFA:0001299 ! vagal placode 3 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001305 name: vagal ganglion 4 namespace: zebrafish_anatomy synonym: "gX4" RELATED [] synonym: "nodose ganglion 4" RELATED [] xref: ZFIN:ZDB-ANAT-050915-110 is_a: ZFA:0000013 ! cranial ganglia relationship: develops_from ZFA:0001300 ! vagal placode 4 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001306 name: pharyngeal arch namespace: zebrafish_anatomy synonym: "pharyngeal arches" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-050915-111 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001307 name: pharyngeal musculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-112 is_a: ZFA:0000328 ! cephalic musculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001306 ! pharyngeal arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001308 name: cardinal organism part namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-113 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001094 ! whole organism relationship: start ZFS:0000017 ! Gastrula:50%-epiboly [Term] id: ZFA:0001309 name: neurogenic placode namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-114 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000016 ! ectoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001310 name: dorsolateral placode namespace: zebrafish_anatomy synonym: "dorsolateral placodes" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-050915-115 is_a: ZFA:0001309 ! neurogenic placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001311 name: roof plate rhombomere namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-051116-1 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001064 ! rhombomere relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001312 name: dorsal anterior lateral line ganglion namespace: zebrafish_anatomy synonym: "anterodorsal lateral line ganglion" RELATED [] xref: ZFIN:ZDB-ANAT-050915-116 is_a: ZFA:0001391 ! anterior lateral line ganglia relationship: develops_from ZFA:0001316 ! anterior lateral line placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001313 name: ventral anterior lateral line ganglion namespace: zebrafish_anatomy synonym: "anteroventral lateral line ganglion" RELATED [] xref: ZFIN:ZDB-ANAT-050915-117 is_a: ZFA:0001391 ! anterior lateral line ganglia relationship: develops_from ZFA:0001316 ! anterior lateral line placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001314 name: posterior lateral line ganglion namespace: zebrafish_anatomy def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-050915-118 is_a: ZFA:0000120 ! lateral line ganglion relationship: develops_from ZFA:0001156 ! posterior lateral line placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001315 name: atrioventricular canal namespace: zebrafish_anatomy synonym: "AV canal" RELATED [] xref: ZFIN:ZDB-ANAT-051116-2 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0001316 name: anterior lateral line placode namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-050915-119 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0001468 ! anterior lateral line system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001317 name: endocardial cushion namespace: zebrafish_anatomy def: "Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves." [ZFIN:curator] synonym: "endocardial cushions" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-051116-3 relationship: develops_from ZFA:0005072 ! endocardial ring relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0001318 name: cardiac jelly namespace: zebrafish_anatomy def: "The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-051116-4 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000149 ! primitive heart tube relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001319 name: myocardium namespace: zebrafish_anatomy synonym: "cardiac muscle" RELATED [] xref: ZFIN:ZDB-ANAT-051116-5 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001320 name: endocardium namespace: zebrafish_anatomy def: "Layer that lines the lumen of the heart." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-051116-6 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001321 name: neurocranial trabeculae namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-051116-7 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000351 ! ethmoid region relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001322 name: dorsoventral diencephalic tract namespace: zebrafish_anatomy def: "A tract originating in the epiphysis and fasiculating with the tract of the postoptic commissure. Ross et al, 1992." [ZFIN:curator] synonym: "DVDT" RELATED [] xref: ZFIN:ZDB-ANAT-060131-6 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000338 ! diencephalic tracts and commissures relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001323 name: mid intestine namespace: zebrafish_anatomy def: "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060131-7 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001324 name: enteric musculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-8 is_a: ZFA:0000548 ! musculature system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001325 name: neural prezygopophyses namespace: zebrafish_anatomy def: "Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-7 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001066 ! neural arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001326 name: lens epithelium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-9 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000035 ! lens relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001327 name: abdominal musculature namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-10 is_a: ZFA:0000473 ! body musculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001328 name: neuromere namespace: zebrafish_anatomy def: "A metameric segment of the central nervous system." [ZFIN:curator] synonym: "neural segment" RELATED [] synonym: "neuromeres" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-060131-11 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001329 name: retinal inner plexiform layer namespace: zebrafish_anatomy def: "The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-051116-8 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001330 name: retinal outer plexiform layer namespace: zebrafish_anatomy def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-051116-9 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001331 name: outer limiting membrane namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-051116-10 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001332 name: spinal neuromere namespace: zebrafish_anatomy synonym: "spinal cord segment" RELATED [] synonym: "spinal neuromeres" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-060131-12 is_a: ZFA:0001328 ! neuromere relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001333 name: visceral organ namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-13 is_obsolete: true [Term] id: ZFA:0001334 name: presumptive enteric nervous system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-14 is_a: ZFA:0001116 ! presumptive structure relationship: develops_from ZFA:0000818 ! vagal neural crest relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001335 name: supradorsal namespace: zebrafish_anatomy def: "Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-8 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001066 ! neural arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001336 name: neural spine namespace: zebrafish_anatomy def: "Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-9 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001066 ! neural arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001337 name: spermatogonia namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-15 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000598 ! testis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001338 name: intestine namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-16 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001339 name: nucleus of the tract of the anterior commissure namespace: zebrafish_anatomy def: "Telencephalic nucleus containing the cell bodies of neurons whose axons form the anterior commissure." [ZFIN:curator] synonym: "ntAC" RELATED [] xref: ZFIN:ZDB-ANAT-060131-17 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001108 ! anterior commissure relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001340 name: nucleus of the tract of the postoptic commissure namespace: zebrafish_anatomy def: "The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure." [ZFIN:curator] synonym: "ntPOC" RELATED [] xref: ZFIN:ZDB-ANAT-060131-18 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001341 name: intervening zone namespace: zebrafish_anatomy def: "A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003." [ZFIN:curator] synonym: "IZ" RELATED [] xref: ZFIN:ZDB-ANAT-060131-19 relationship: develops_from ZFA:0001342 ! presumptive intervening zone relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000042 ! midbrain hindbrain boundary relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001342 name: presumptive intervening zone namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-20 relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0001187 ! presumptive midbrain hindbrain boundary relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001343 name: telencephalon diencephalon boundary namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-21 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000109 ! forebrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001344 name: zona limitans intrathalamica namespace: zebrafish_anatomy def: "The border between the dorsal and ventral thalamus." [ZFIN:curator] synonym: "zli" RELATED [] xref: ZFIN:ZDB-ANAT-060131-22 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001215 ! thalamus relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001345 name: interrenal gland namespace: zebrafish_anatomy def: "An epithelial structure consisting of steroid producing cells interposed with chromaffin cells embedded within the head kidney. The interrenal gland is thought to be the equivalent of the mammalian adrenal cortex in zebrafish. Hsu et al. 2003." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060131-23 relationship: develops_from ZFA:0001346 ! interrenal primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000669 ! head kidney relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001346 name: interrenal primordium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-24 relationship: develops_from ZFA:0001206 ! intermediate mesoderm relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001347 name: stratum fibrosum et griseum superficiale namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-25 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001348 name: stratum marginale namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-26 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001349 name: stratum opticum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-27 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001350 name: stratum griseum centrale namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-28 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001351 name: stratum album centrale namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-29 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001352 name: stratum periventriculare namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-30 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001353 name: mesencephalic tectum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-31 relationship: develops_from ZFA:0001357 ! alar plate midbrain relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001354 name: mesencephalic tegmentum namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-32 relationship: develops_from ZFA:0000761 ! basal plate midbrain relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001355 name: primitive meninx namespace: zebrafish_anatomy synonym: "meninges" RELATED [] synonym: "meninx primitiva" RELATED [] xref: ZFIN:ZDB-ANAT-060131-33 relationship: develops_from ZFA:0000045 ! neural crest relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001356 name: terminal nerve namespace: zebrafish_anatomy def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. Whitlock 2004. Also see Grens, Greenwood and Fernald, Brain Behav Evol 2005; 66(1):1-9." [ZFIN:curator] synonym: "nervus terminalis" RELATED [] xref: ZFIN:ZDB-ANAT-060131-34 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001357 name: alar plate midbrain namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-35 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001358 name: roof plate diencephalon namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-36 relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001359 name: pineal complex namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-37 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000509 ! epithalamus relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001360 name: parapineal organ namespace: zebrafish_anatomy def: "An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry. Gamse et al, 2003." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060131-38 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001359 ! pineal complex relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001361 name: basiventral namespace: zebrafish_anatomy def: "Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches." [ZFIN:curator] synonym: "arcualia" RELATED [] xref: ZFIN:ZDB-ANAT-060331-10 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001189 ! vertebrae relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001362 name: parapophysis namespace: zebrafish_anatomy def: "Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [ZFIN:curator] synonym: "lateral process of basiventral" RELATED [] synonym: "transverse process" RELATED [] xref: ZFIN:ZDB-ANAT-060331-11 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001361 ! basiventral relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001363 name: neural complex namespace: zebrafish_anatomy def: "The neural complex is the collective term for the ossified supraneurals (Sn 2 and Sn 3) and their membrane bone extensions above the first four vertebrae." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-12 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000442 ! supraneural relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001364 name: hemal spine namespace: zebrafish_anatomy def: "Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-13 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000519 ! hemal arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001365 name: trigeminal motor nuclei namespace: zebrafish_anatomy synonym: "motor nucleus V" RELATED [] synonym: "nV" RELATED [] xref: ZFIN:ZDB-ANAT-060131-39 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001366 name: tract of the postoptic commissure namespace: zebrafish_anatomy synonym: "TPOC" RELATED [] xref: ZFIN:ZDB-ANAT-060131-40 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000059 ! postoptic commissure relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001367 name: forebrain midbrain boundary namespace: zebrafish_anatomy def: "The boundary between the diencephalon and the mesencephalon." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060131-41 relationship: develops_from ZFA:0001368 ! presumptive forebrain midbrain boundary relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001368 name: presumptive forebrain midbrain boundary namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-42 relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000146 ! presumptive brain relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001369 name: anterior pancreatic bud namespace: zebrafish_anatomy synonym: "ventral pancreatic anlage" RELATED [] xref: ZFIN:ZDB-ANAT-060131-43 is_a: ZFA:0001390 ! pancreatic bud relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0001370 name: posterior pancreatic bud namespace: zebrafish_anatomy synonym: "dorsal pancreatic anlage" RELATED [] xref: ZFIN:ZDB-ANAT-060131-44 is_a: ZFA:0001390 ! pancreatic bud relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001371 name: pancreatic system namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-45 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001372 name: pancreatic duct namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-46 relationship: develops_from ZFA:0001369 ! anterior pancreatic bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001371 ! pancreatic system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001373 name: migratory slow muscle precursor cell namespace: zebrafish_anatomy def: "Cells that initially are located adjacent to the spinal cord and notochord along that migrate migrate from their initial medial position radially through the myotome to the lateral surface of the somites." [ZFIN:curator] synonym: "migratory slow muscle precursor cells" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-060131-47 relationship: develops_from ZFA:0000003 ! adaxial cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000155 ! somite relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001374 name: atrial myocardium namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-48 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000471 ! atrium relationship: part_of ZFA:0001319 ! myocardium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001375 name: ventriculo bulbo valve namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-49 is_a: ZFA:0005065 ! heart valve relationship: develops_from ZFA:0001317 ! endocardial cushion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000009 ! cardiac ventricle relationship: part_of ZFA:0000173 ! bulbus arteriosus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001376 name: presumptive ectoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-50 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000019 ! Gastrula:Shield relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0001377 name: presumptive mesoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-51 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000021 ! Gastrula:90%-epiboly relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0001378 name: axial hypoblast namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-52 relationship: develops_from ZFA:0000071 ! shield relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000117 ! hypoblast relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001379 name: pharyngeal ectoderm namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-53 relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001380 name: hemal prezygopophysis namespace: zebrafish_anatomy def: "Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygopophyses." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-14 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000519 ! hemal arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001381 name: hypohyal namespace: zebrafish_anatomy def: "Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-15 relationship: develops_from ZFA:0001400 ! ceratohyal cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001382 name: epibranchial uncinate process namespace: zebrafish_anatomy def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060331-16 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000658 ! epibranchial relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001383 name: fin bud namespace: zebrafish_anatomy synonym: "fin buds" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-060131-54 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000108 ! fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001384 name: pelvic fin bud namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-55 is_a: ZFA:0001383 ! fin bud relationship: develops_from ZFA:0001454 ! pelvic fin field relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001385 name: apical ectodermal ridge pelvic fin bud namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-56 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001384 ! pelvic fin bud relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001386 name: mesoderm pelvic fin bud namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-57 relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001384 ! pelvic fin bud relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001387 name: pelvic fin skeleton namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-58 is_a: ZFA:0000027 ! paired fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001184 ! pelvic fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001388 name: epithelial mesenchymal boundary namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-060131-59 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001269 ! regenerating fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001389 name: regeneration epithelium namespace: zebrafish_anatomy synonym: "wound epithelium" RELATED [] xref: ZFIN:ZDB-ANAT-060131-60 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001269 ! regenerating fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001390 name: pancreatic bud namespace: zebrafish_anatomy synonym: "pancreatic buds" RELATED PLURAL [] xref: ZFIN:ZDB-ANAT-060131-61 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000254 ! pancreas primordium relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: part_of ZFA:0001371 ! pancreatic system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001391 name: anterior lateral line ganglia namespace: zebrafish_anatomy def: "The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-060131-62 is_a: ZFA:0000120 ! lateral line ganglion relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001392 name: parapophysis 1 namespace: zebrafish_anatomy def: "Lateral projections from the fir